View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1427_low_9 (Length: 238)

Name: NF1427_low_9
Description: NF1427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1427_low_9
NF1427_low_9
[»] chr2 (12 HSPs)
chr2 (1-221)||(26377482-26377705)
chr2 (85-141)||(36536186-36536242)
chr2 (86-140)||(44673411-44673465)
chr2 (131-185)||(33391760-33391814)
chr2 (131-185)||(25438599-25438653)
chr2 (103-140)||(25438556-25438593)
chr2 (86-135)||(42975667-42975716)
chr2 (86-130)||(40712598-40712642)
chr2 (131-185)||(21005776-21005830)
chr2 (106-140)||(37154651-37154685)
chr2 (131-185)||(39573914-39573968)
chr2 (140-185)||(44673480-44673525)
[»] chr8 (14 HSPs)
chr8 (86-185)||(29168253-29168367)
chr8 (87-140)||(3376135-3376188)
chr8 (86-140)||(1548387-1548441)
chr8 (86-143)||(1469149-1469206)
chr8 (86-140)||(3117953-3118007)
chr8 (131-185)||(3118013-3118067)
chr8 (131-185)||(3277755-3277809)
chr8 (86-140)||(23033625-23033679)
chr8 (86-140)||(34784304-34784358)
chr8 (131-185)||(15660542-15660596)
chr8 (86-140)||(20901016-20901070)
chr8 (131-185)||(23033685-23033739)
chr8 (135-185)||(34784244-34784294)
chr8 (140-185)||(1548456-1548501)
[»] chr1 (6 HSPs)
chr1 (86-141)||(47523917-47523972)
chr1 (80-140)||(33966872-33966932)
chr1 (88-140)||(43866439-43866492)
chr1 (140-185)||(47523986-47524031)
chr1 (88-135)||(50204752-50204799)
chr1 (86-140)||(18990146-18990200)
[»] chr3 (11 HSPs)
chr3 (40-128)||(50064073-50064156)
chr3 (86-134)||(9454866-9454914)
chr3 (86-140)||(7227322-7227376)
chr3 (86-140)||(7323086-7323140)
chr3 (86-140)||(32130406-32130460)
chr3 (131-185)||(50064174-50064228)
chr3 (131-185)||(53208431-53208485)
chr3 (86-140)||(53208491-53208545)
chr3 (140-185)||(9454935-9454980)
chr3 (131-188)||(32130466-32130523)
chr3 (131-185)||(7323146-7323200)
[»] chr4 (15 HSPs)
chr4 (86-140)||(4289884-4289938)
chr4 (86-140)||(2588296-2588350)
chr4 (86-140)||(49577367-49577421)
chr4 (131-185)||(5650486-5650540)
chr4 (86-140)||(16497515-16497569)
chr4 (88-140)||(39598914-39598966)
chr4 (86-140)||(5650546-5650600)
chr4 (131-185)||(16497455-16497509)
chr4 (140-185)||(49577307-49577352)
chr4 (87-135)||(55911385-55911433)
chr4 (140-187)||(2588234-2588281)
chr4 (131-185)||(11157135-11157189)
chr4 (86-132)||(16497714-16497760)
chr4 (131-185)||(39598854-39598908)
chr4 (86-134)||(52249337-52249385)
[»] chr6 (6 HSPs)
chr6 (89-140)||(18133708-18133759)
chr6 (89-140)||(23889848-23889899)
chr6 (86-140)||(13425504-13425558)
chr6 (40-133)||(25100849-25100937)
chr6 (135-185)||(25100781-25100831)
chr6 (140-185)||(13425444-13425489)
[»] chr7 (8 HSPs)
chr7 (86-140)||(12859031-12859085)
chr7 (131-185)||(11599456-11599510)
chr7 (86-140)||(19886815-19886869)
chr7 (86-140)||(32775414-32775468)
chr7 (86-141)||(46082269-46082324)
chr7 (86-140)||(36167534-36167588)
chr7 (86-133)||(19780900-19780947)
chr7 (131-185)||(32775474-32775528)
[»] chr5 (7 HSPs)
chr5 (86-140)||(7992193-7992247)
chr5 (131-186)||(28277014-28277069)
chr5 (86-140)||(41377637-41377691)
chr5 (87-133)||(41106773-41106819)
chr5 (86-134)||(5240691-5240739)
chr5 (94-140)||(28276962-28277008)
chr5 (131-185)||(28828254-28828308)
[»] scaffold0325 (2 HSPs)
scaffold0325 (131-185)||(8650-8704)
scaffold0325 (88-140)||(8591-8643)
[»] scaffold0302 (1 HSPs)
scaffold0302 (86-140)||(17334-17388)
[»] scaffold0604 (1 HSPs)
scaffold0604 (131-186)||(453-508)
[»] scaffold0768 (1 HSPs)
scaffold0768 (86-135)||(4433-4481)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26377482 - 26377705
Alignment:
Q  1 ttgttgcctctgtttttcctctatttcctctgnnnnnnngcttggttcccttatttttgctctatattctatgtttatattatacctctcaactctatca 100  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377482 ttgttgcctctgtttttcctctatttcctctgtttttttgcttggttcccttatttttgctctatattctatgtttatattatacctctcaactctatca 26377581  T
Q  101 ata---acctaccgatcctacttacgaaccgtgttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatcagcgcaagtat 197  Q
    |||   ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  26377582 ataataacctacctatcctacttacgaaccgtgttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacatcagggcaagtat 26377681  T
Q  198 gagccatactcaacactagagatt 221  Q
    ||||||||||||||||||||||||    
T  26377682 gagccatactcaacactagagatt 26377705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 36536242 - 36536186
Alignment:
Q  85 cctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcctt 141  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  36536242 cctctcaactctatcaacaacctaccgatcctacttacaaaccgtgttacgtgcctt 36536186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 44673411 - 44673465
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  44673411 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 44673465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 33391814 - 33391760
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    ||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||    
T  33391814 ttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacat 33391760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 25438599 - 25438653
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  25438599 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 25438653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 25438556 - 25438593
Alignment:
Q  103 aacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25438556 aacctatcgatcctacttacgaaccgtgttacgttcct 25438593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 42975716 - 42975667
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacg 135  Q
    |||||||||||||||| |||||||||||||||||||  || |||||||||    
T  42975716 ctctcaactctatcaacaacctaccgatcctacttataaatcgtgttacg 42975667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 40712642 - 40712598
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtg 130  Q
    |||||||||||||||| |||||||| |||||||||||| ||||||    
T  40712642 ctctcaactctatcaaaaacctaccaatcctacttacggaccgtg 40712598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 21005830 - 21005776
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  21005830 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 21005776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 37154685 - 37154651
Alignment:
Q  106 ctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||| ||||||||||||||||||||||||||||||    
T  37154685 ctactgatcctacttacgaaccgtgttacgttcct 37154651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 39573968 - 39573914
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  39573968 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 39573914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 44673480 - 44673525
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  44673480 ttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 44673525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 29168367 - 29168253
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcc---------------ttcaccggccgatcgatcctatgtaggatct 170  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||               |||||||||||| ||||||||||||||||||    
T  29168367 ctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcaccggccgaccgatcctatgtaggatct 29168268  T
Q  171 cgatcctgactacat 185  Q
    | |||||||||||||    
T  29168267 ctatcctgactacat 29168253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 3376188 - 3376135
Alignment:
Q  87 tctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3376188 tctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcct 3376135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 1548387 - 1548441
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  1548387 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 1548441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 1469149 - 1469206
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttccttca 143  Q
    ||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||    
T  1469149 ctctcaactctatgaacaacctaccgatcctacttacggaccgtgtttcgttccttca 1469206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 3117953 - 3118007
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||| ||||||||||||    
T  3117953 ctctcaattctatctacaacctatcgatcctacttacgaaccatgttacgttcct 3118007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3118013 - 3118067
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| | ||||||||||||| |||| ||||||||||||    
T  3118013 ttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacat 3118067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 3277755 - 3277809
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  3277755 ttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacat 3277809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 23033625 - 23033679
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||  | |||||| |||||||||||||||||||||||||||||||    
T  23033625 ctctcaattctattgacaacctatcgatcctacttacgaaccgtgttacgttcct 23033679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 34784358 - 34784304
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| ||||||||||||| |||||||||||||||||    
T  34784358 ctctcaattctatcgacaacctaacgatcctacttacaaaccgtgttacgttcct 34784304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 15660542 - 15660596
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||| |||||||||||| ||||| ||||||||| | |||| ||||||||||||    
T  15660542 ttacgtcccttcaccggccaatcgaacctatgtagaaactcgttcctgactacat 15660596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 20901016 - 20901070
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | ||||||  ||||| ||||||||||||||||||||||||    
T  20901016 ctctcaattctatcgacaacctattgatcccacttacgaaccgtgttacgttcct 20901070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 23033685 - 23033739
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| ||| |||| |||||| |||| ||||||||||||    
T  23033685 ttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacat 23033739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 34784294 - 34784244
Alignment:
Q  135 gttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  34784294 gttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 34784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 1548456 - 1548501
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  1548456 ttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 47523917 - 47523972
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcctt 141  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47523917 ctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctt 47523972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 33966872 - 33966932
Alignment:
Q  80 ttatacctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  33966872 ttatatctctcaactctatcaataacctaccgatcctacttacgaactgtgttacattcct 33966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 43866439 - 43866492
Alignment:
Q  88 ctcaactctatcaataac-ctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||| ||  |||| ||||||||||||||||||||||||||||||    
T  43866439 ctcaactctatcaaaaaagctactgatcctacttacgaaccgtgttacgttcct 43866492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 47523986 - 47524031
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| ||||||||  |||||||||||||||||||||||    
T  47523986 ttcaccggccgaccgatcctacataggatctcgatcctgactacat 47524031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 50204752 - 50204799
Alignment:
Q  88 ctcaactctatcaataacctaccgatcctacttacgaaccgtgttacg 135  Q
    |||||||||||||| ||||||| |||| |||||||||| |||||||||    
T  50204752 ctcaactctatcaacaacctactgatcttacttacgaagcgtgttacg 50204799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 18990200 - 18990146
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| ||||||||||||| || ||| |||| ||||| ||||||    
T  18990200 ctctcaactctatcaacaacctaccgatccaacatacaaaccatgttatgttcct 18990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 128
Target Start/End: Original strand, 50064073 - 50064156
Alignment:
Q  40 gcttggttcccttatttttgctctatattctatgtttatattatacctctcaactctatcaataacctaccgatcctacttacgaaccg 128  Q
    ||||||||||  | ||||| ||||||||||| |||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  50064073 gcttggttcctctgtttttcctctatattctctgtttatat-----ctctcaactctatcaataacctaccgatcctacttacgaaccg 50064156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 9454866 - 9454914
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttac 134  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  9454866 ctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttac 9454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 7227322 - 7227376
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| ||||||||||||||| |||||||||||| ||| |||||    
T  7227322 ctctcaactctatcaacaacctaccgatcctaattacgaaccgtggtacattcct 7227376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 7323086 - 7323140
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||    
T  7323086 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcct 7323140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 32130406 - 32130460
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||    
T  32130406 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcct 32130460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 50064174 - 50064228
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||| |||||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  50064174 ttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacat 50064228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 53208485 - 53208431
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  53208485 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 53208431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 53208545 - 53208491
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||| ||||||||||||||||||    
T  53208545 ctctcaattctatcgacaacctatcgatcctacttatgaaccgtgttacgttcct 53208491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 9454935 - 9454980
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| |||||||| |||||||| |||||||||||||||    
T  9454935 ttcaccggccgaccgatcctacgtaggatcacgatcctgactacat 9454980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 32130466 - 32130523
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatcag 188  Q
    |||||||| |||| ||||||| |||||||| |||||| |||| |||||||||||||||    
T  32130466 ttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacatcag 32130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 7323146 - 7323200
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||| || | ||||||||||||    
T  7323146 ttacgttctttcaccggccgaccgatcctacgtaggaacttgttcctgactacat 7323200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 4289938 - 4289884
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  4289938 ctctcaactctatcaacaacctaccgatcctacttacgaaccgggttacgttcct 4289884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 2588350 - 2588296
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  2588350 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 2588296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 49577421 - 49577367
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  49577421 ctctcaactctatcaacaacctaccgatcctacttatgaactgtgttacgttcct 49577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 5650540 - 5650486
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||    
T  5650540 ttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 16497569 - 16497515
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||    
T  16497569 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcct 16497515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 39598966 - 39598914
Alignment:
Q  88 ctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||||| |||| |||||||||||||||||||||||| ||| |||||||||    
T  39598966 ctcaactctgtcaacaacctaccgatcctacttacgaacagtgctacgttcct 39598914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 5650600 - 5650546
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | | |||| |||||||||||||||||||||||||||||||    
T  5650600 ctctcaattctatcgacagcctatcgatcctacttacgaaccgtgttacgttcct 5650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 16497509 - 16497455
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  16497509 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 16497455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 49577352 - 49577307
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||    
T  49577352 ttcaccggccgaccgatcctacgtaggatctcgatcatgactacat 49577307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 55911385 - 55911433
Alignment:
Q  87 tctcaactctatcaataacctaccgatcctacttacgaaccgtgttacg 135  Q
    ||||||||||||||| |||||||||||||||||||  || |||||||||    
T  55911385 tctcaactctatcaacaacctaccgatcctacttataaatcgtgttacg 55911433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 2588281 - 2588234
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacatca 187  Q
    |||||||||||| |||||||| |||||| |||| ||||||||||||||    
T  2588281 ttcaccggccgaccgatcctacgtaggaactcgttcctgactacatca 2588234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 11157135 - 11157189
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  11157135 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 11157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 16497760 - 16497714
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgtt 132  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||    
T  16497760 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgtt 16497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 39598908 - 39598854
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| ||||| | |||| ||||||||  |||||||||||||||||||||||    
T  39598908 ttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactacat 39598854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 52249385 - 52249337
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttac 134  Q
    ||||||| |||||| | |||||| |||||||||| ||||||||||||||    
T  52249385 ctctcaattctatcgacaacctatcgatcctactgacgaaccgtgttac 52249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 18133759 - 18133708
Alignment:
Q  89 tcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  18133759 tcaactctatcaaaaacctaccgatcctacttatgaaccgtgttacgttcct 18133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 23889899 - 23889848
Alignment:
Q  89 tcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  23889899 tcaactctatcaaaaacctaccgatcctactaacgaaccgtgttacgttcct 23889848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 13425558 - 13425504
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  13425558 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 13425504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 25100937 - 25100849
Alignment:
Q  40 gcttggttcccttatttttgctctatattctatgtttatattatacctctcaactctatcaataacctaccgatcctacttacgaaccgtgtta 133  Q
    ||||||||||  ||||||| ||||||||||| ||||||||||     ||||||  ||||||| |||||||||||||||||||||||| ||||||    
T  25100937 gcttggttcctctatttttcctctatattctctgtttatatt-----tctcaatactatcaacaacctaccgatcctacttacgaactgtgtta 25100849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 25100831 - 25100781
Alignment:
Q  135 gttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    ||||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  25100831 gttccttcaccggccgaccaatcctatgtaggatcttgatcctaactacat 25100781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 13425489 - 13425444
Alignment:
Q  140 ttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||||||| |||||||| |||||| |||| ||||||||||||    
T  13425489 ttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 13425444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 12859085 - 12859031
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  12859085 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 12859031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 11599510 - 11599456
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||||||||||||||    
T  11599510 ttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacat 11599456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 19886815 - 19886869
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||    
T  19886815 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcct 19886869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 32775414 - 32775468
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||    
T  32775414 ctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcct 32775468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 46082324 - 46082269
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcctt 141  Q
    |||||||||||||||| |||||| | ||||||| || |||||||||||||||||||    
T  46082324 ctctcaactctatcaacaacctagcaatcctacatatgaaccgtgttacgttcctt 46082269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 36167588 - 36167534
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||| | |||||| | |||||||||||||||||||||||||||||    
T  36167588 ctctcaattctatcgacaacctatcaatcctacttacgaaccgtgttacgttcct 36167534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 19780947 - 19780900
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgtta 133  Q
    |||||||||||||||| || ||||| |||||||||||||| |||||||    
T  19780947 ctctcaactctatcaacaagctacctatcctacttacgaatcgtgtta 19780900  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 32775474 - 32775528
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| | |||| |||| ||||||||||||    
T  32775474 ttacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacat 32775528  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 7992247 - 7992193
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||    
T  7992247 ctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcct 7992193  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 28277014 - 28277069
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatc 186  Q
    |||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||    
T  28277014 ttacgttctttcaccggccaatcgatcctacgtaggatctcaatcctgactacatc 28277069  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 41377691 - 41377637
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| |||||||| ||||||||||| || ||||||||||||||    
T  41377691 ctctcaactctatcaacaacctaccaatcctacttacaaatcgtgttacgttcct 41377637  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 41106773 - 41106819
Alignment:
Q  87 tctcaactctatcaataacctaccgatcctacttacgaaccgtgtta 133  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||||    
T  41106773 tctcaactctatcaacaacctacggatcctacttacgaatcgtgtta 41106819  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 5240691 - 5240739
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttac 134  Q
    |||||||||||||||| ||||||| ||||||||||| ||||| ||||||    
T  5240691 ctctcaactctatcaacaacctactgatcctacttatgaaccatgttac 5240739  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 28276962 - 28277008
Alignment:
Q  94 tctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||||    
T  28276962 tctatcaacaacctattgatcctacttacgaactgtgttacgttcct 28277008  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 28828254 - 28828308
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||| |||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  28828254 ttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacat 28828308  T

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Target: scaffold0325 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 8650 - 8704
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacat 185  Q
    |||||||| |||||||||||| |||||||| |||||||||| |||||||||||||    
T  8650 ttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacat 8704  T

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Target: scaffold0325; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 8591 - 8643
Alignment:
Q  88 ctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||| |||||| |||||||| |||| |||||||| ||||||||    
T  8591 ctcaactctatcaaaaacctaacgatcctatttacaaaccgtgtcacgttcct 8643  T

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Target: scaffold0302 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 17334 - 17388
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacgttcct 140  Q
    |||||||||||||||| ||  || || ||||||||||||||||||||||||||||    
T  17334 ctctcaactctatcaacaaagtatcgctcctacttacgaaccgtgttacgttcct 17388  T

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Target: scaffold0604 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 453 - 508
Alignment:
Q  131 ttacgttccttcaccggccgatcgatcctatgtaggatctcgatcctgactacatc 186  Q
    |||||||||| |||||||| ||||| |||| |||||| |||| |||||||||||||    
T  453 ttacgttcctacaccggccaatcgaacctacgtaggaactcgttcctgactacatc 508  T

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Target: scaffold0768 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 4433 - 4481
Alignment:
Q  86 ctctcaactctatcaataacctaccgatcctacttacgaaccgtgttacg 135  Q
    |||||||||||||||| | |||| ||||||||||||||||| ||||||||    
T  4433 ctctcaactctatcaaca-cctatcgatcctacttacgaactgtgttacg 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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