View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14281_low_2 (Length: 382)
Name: NF14281_low_2
Description: NF14281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14281_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 30276843 - 30277210
Alignment:
| Q |
1 |
caataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaacaata |
100 |
Q |
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| T |
30276843 |
caataaaaagaataaagattagaaatctgattttgcaacctacgcaagagctaggtatgtaacatgcaggaatatccttcataaacatgaatgaacaata |
30276942 |
T |
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| Q |
101 |
ctagtccttcactttttataagcccctttgatacttttcacatatggagtattaagaaaagtttgtagtttaattaatgtgtatgtaatgtatgaatatt |
200 |
Q |
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| T |
30276943 |
ctagtccttctctttttataagcccctttgatacttttcacatatggagtattaagaaaagtttgtagtttaattaatgtgtatgtaatgtatgaatatt |
30277042 |
T |
|
| Q |
201 |
actaaattgtcttttttgtgtatagatgtgtcaaattatgactatgtttcaacacaaattagtaccagtatcaatcaatggtatgtttgaaagaaaaata |
300 |
Q |
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| T |
30277043 |
actaaattgtcttttttgtgtatagatgtgtcaaattatgactatctttcaacacaaattagtactagtatcaatcaagggtatgtttgaaagaaaaata |
30277142 |
T |
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| Q |
301 |
gtagtaaatgcaatttgaaatatggtttaaatctagaaacaaattttcatatctaagctcataaacct |
368 |
Q |
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| T |
30277143 |
gtagtaaatgcaatttgaaatatggtttaaatttaacaacacattttcatatctaagctcataaacct |
30277210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 30511760 - 30511728
Alignment:
| Q |
150 |
tattaagaaaagtttgtagtttaattaatgtgt |
182 |
Q |
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| T |
30511760 |
tattaagaaaagtttgtagtttatttaatgtgt |
30511728 |
T |
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