View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_1 (Length: 600)
Name: NF14282_high_1
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 77 - 487
Target Start/End: Original strand, 14200164 - 14200569
Alignment:
| Q |
77 |
attggatccgaggtaatctttactgtaggactacttttagtatttcataagaattgcttattacaaatgacgaccattttaatataaatggcctttggta |
176 |
Q |
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| T |
14200164 |
attggatccgagttaatctttactgtagtactacttatagtatttcataagaattgcttattacaaatgacgaccattttaatataaatggcctttggta |
14200263 |
T |
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| Q |
177 |
aaattaatactactatataggattctaacttttaaattgtttgttttaaaatattttctaagttgcaatatataattatcgtgtccaatgatataatgtg |
276 |
Q |
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| T |
14200264 |
aaattaataata---tataggattctaacttttaaattgtttgttttaaaatattttctaagttgcaatatataattatcgtgtccaatgatataatgtg |
14200360 |
T |
|
| Q |
277 |
actgctgaaatgttgaatattaattgctttt-----atgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctcctt |
371 |
Q |
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| T |
14200361 |
actgctgaaatgttgaatagtaattgcttttattttatgcacacacgtttttgtatgataatacgaagttgatttatgtccttatatttccccgctcctt |
14200460 |
T |
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| Q |
372 |
accatgttttacggcttcgctcaatgcatttgaactggacatgtatgagttctttgtaattgtgggttgacacttgacatgttgtatggatttctttgta |
471 |
Q |
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| T |
14200461 |
accatgttttacgacttcgctcaatgcatttgaactggacatgtatgagttctttgtaagtgtggg-------ttgacatgttgtatggatttctttgta |
14200553 |
T |
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| Q |
472 |
tgcatgagttgacgtg |
487 |
Q |
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| T |
14200554 |
tgcatgagttgacgtg |
14200569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 487
Target Start/End: Original strand, 14201171 - 14201213
Alignment:
| Q |
445 |
ttgacatgttgtatggatttctttgtatgcatgagttgacgtg |
487 |
Q |
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| T |
14201171 |
ttgacatgttgtatggagttctttgtacgcatgagtttacgtg |
14201213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 276 - 418
Target Start/End: Complemental strand, 24641924 - 24641782
Alignment:
| Q |
276 |
gactgctgaaatgttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttacca |
375 |
Q |
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| T |
24641924 |
gactgcttaaattgtgaacattaattgcttttatgcacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttaccg |
24641825 |
T |
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| Q |
376 |
tgttttacggcttcgctcaatgcatttgaactggacatgtatg |
418 |
Q |
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| T |
24641824 |
ttttttatggcttcgatcgatgcatttgagctggatatgtatg |
24641782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 1873636 - 1873607
Alignment:
| Q |
22 |
acggcccggcccattttgacagctctacct |
51 |
Q |
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| T |
1873636 |
acggcccggcccattttgacagctctacct |
1873607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 418
Target Start/End: Complemental strand, 27061430 - 27061301
Alignment:
| Q |
289 |
ttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttaccatgttttacggctt |
388 |
Q |
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| T |
27061430 |
ttgaacattgattgcttttatgaacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttacctttgtttatggctt |
27061331 |
T |
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| Q |
389 |
cgctcaatgcatttgaactggacatgtatg |
418 |
Q |
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| T |
27061330 |
tgatcagtgcatttgagctggatatgtatg |
27061301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 35813540 - 35813568
Alignment:
| Q |
22 |
acggcccggcccattttgacagctctacc |
50 |
Q |
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| T |
35813540 |
acggcccggcccattttgacagctctacc |
35813568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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