View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14282_high_12 (Length: 448)
Name: NF14282_high_12
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 93 - 431
Target Start/End: Original strand, 21153134 - 21153469
Alignment:
| Q |
93 |
aaatatgaataactaattgatcatgaagtagtatattttagtttaatttagaggcaatagtctgtcttgataattataaatattttcatttacaacttgc |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21153134 |
aaatatgaataactaattgatcatgaagtagtatattttagtttaatttggaggcaatagtctgtcttgataattataaatattttcatttacaacttgt |
21153233 |
T |
|
| Q |
193 |
tgtcaatctattaacaatatattggtctcactcacacaaagatattgaaatgaagtcaagcctatacnnnnnnnacattggatataaaagttatatgtct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
21153234 |
tgtcaatctattaacaatatattggtctcactcacacaaagatattgaaatgaagtcaagcctatactttttttacattagatataaaagttatatgtct |
21153333 |
T |
|
| Q |
293 |
aatcctcgtattgaaatattagcagcactacattagacatgtcgaaaatatattttggttggggtatgattcaacacacataagggatttatcgtttttc |
392 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21153334 |
aatcctcgtaatgaaatatt---agcactacattagacatgtcgaaaatatattttggttggggtatgattcaacacacataagggatttatcgtttttc |
21153430 |
T |
|
| Q |
393 |
ttctagaaaatgttactgcattaattttatgaggataat |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21153431 |
ttctagaaaatgttactgcattaattttatgaggataat |
21153469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 21152533 - 21152614
Alignment:
| Q |
1 |
aaatgaatgtctcttaatatactcaaaca---atcaatatgtaggttgtataaaattcttggtgagtattacaaaatgaggg |
79 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21152533 |
aaatgaatgtctcttaatgtactcaaacaacaatcaatatgtaggttgtataaaattcttggtgagtattacaaaatgaggg |
21152614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University