View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_17 (Length: 404)
Name: NF14282_high_17
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_17 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 44 - 387
Target Start/End: Complemental strand, 11023050 - 11022703
Alignment:
| Q |
44 |
tttaacaaacctgccataatgaagctttctcagcc-agaacttagaaccaccagaaaactcagaatcatacctattaggcagatgctgattatgctgctg |
142 |
Q |
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| T |
11023050 |
tttaacaaacctgccataatgaagctttctcagcccagaacttagaaccaccagaaaactcagaatcaaacccattaggaagatgctgattatgctgctg |
11022951 |
T |
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| Q |
143 |
ctgttgttgttgttg---atagataacatcaacttcctcagcagtgttccccaccatatcttccctactcccgcacccacccaatccctcctcctcttga |
239 |
Q |
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| T |
11022950 |
ctgttgttgttgttgttgatagataacatcaacttcctcagcagtgttccccaccatatcttccctactcccgcacccacccaatccctcctcctcttga |
11022851 |
T |
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| Q |
240 |
aaccttctcgaaataaacccaatcatctcatctctctcaacaacctcacgttcaagatcctccacacgcgccttagaatcttccaccaccgctctcaacc |
339 |
Q |
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| T |
11022850 |
aaccttctcgaaataaacccaatcatctcatctctctcaacaacctcacgctcaagatcctccacacgcgccttagaatcttccaccaccgctctcaacc |
11022751 |
T |
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| Q |
340 |
tcacgatctcctctgacgcggcgtcgattcgccgtaagagacgcttct |
387 |
Q |
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| T |
11022750 |
tcacgatctcctccgacgcggcgtcgattcgccgtaagagacgcttct |
11022703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 31500510 - 31500585
Alignment:
| Q |
207 |
ctcccgcacccacccaatccctcctcctcttgaaaccttctcgaaataaacccaatcatctcatctctctcaacaa |
282 |
Q |
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| T |
31500510 |
ctcctgcaaccacccaatccggcctcctcttgaaacctgctcgaaataaactcaatcatgtcatccctttcaacaa |
31500585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 22699 - 22566
Alignment:
| Q |
254 |
aaacccaatcatctcatctctctcaacaacctcacgttcaagatcctccacacgcgccttagaatcttccaccaccgctctcaacctcacgatctcctct |
353 |
Q |
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|||||||||||||||||| | |||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22699 |
aaacccaatcatctcatc-cactcaacaacctcacactccaaatcctccacacacgccttagaatcttccaccaccgctctcaacctcacgatctcctcc |
22601 |
T |
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| Q |
354 |
gacgcggcgtcgattcgccgtaagagacgcttctt |
388 |
Q |
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| T |
22600 |
gacacaacgtcgattcaccgtaagagacgcttctt |
22566 |
T |
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