View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_high_20 (Length: 353)

Name: NF14282_high_20
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_high_20
NF14282_high_20
[»] chr4 (16 HSPs)
chr4 (16-232)||(21152173-21152388)
chr4 (222-353)||(21152409-21152541)
chr4 (145-210)||(2925263-2925328)
chr4 (140-220)||(25692354-25692434)
chr4 (143-194)||(53528645-53528696)
chr4 (140-220)||(12660371-12660451)
chr4 (140-220)||(16326899-16326979)
chr4 (160-216)||(26996175-26996231)
chr4 (140-220)||(30674885-30674965)
chr4 (134-209)||(19569492-19569567)
chr4 (143-210)||(20193672-20193739)
chr4 (143-210)||(53981106-53981173)
chr4 (166-216)||(12747664-12747714)
chr4 (163-216)||(13998981-13999034)
chr4 (140-220)||(1875180-1875260)
chr4 (140-220)||(23192981-23193061)
[»] chr2 (15 HSPs)
chr2 (136-194)||(21290586-21290644)
chr2 (145-283)||(16444391-16444529)
chr2 (160-210)||(19088478-19088528)
chr2 (145-209)||(11311046-11311110)
chr2 (140-220)||(25446244-25446324)
chr2 (140-220)||(43288574-43288654)
chr2 (143-210)||(635295-635362)
chr2 (143-210)||(1524745-1524812)
chr2 (143-210)||(7911042-7911109)
chr2 (143-210)||(14889707-14889774)
chr2 (143-210)||(14897796-14897863)
chr2 (143-210)||(22429359-22429426)
chr2 (143-210)||(22434953-22435020)
chr2 (160-283)||(25229811-25229934)
chr2 (85-154)||(17840157-17840226)
[»] chr6 (3 HSPs)
chr6 (147-283)||(17271126-17271262)
chr6 (150-210)||(6932028-6932088)
chr6 (160-216)||(14461742-14461799)
[»] scaffold0062 (3 HSPs)
scaffold0062 (160-284)||(18938-19062)
scaffold0062 (160-284)||(29106-29230)
scaffold0062 (160-284)||(39095-39219)
[»] chr3 (12 HSPs)
chr3 (160-283)||(17032122-17032245)
chr3 (145-210)||(13925466-13925531)
chr3 (143-216)||(13989845-13989918)
chr3 (160-220)||(21882338-21882398)
chr3 (143-210)||(2169730-2169797)
chr3 (143-210)||(9725763-9725830)
chr3 (143-210)||(10936113-10936180)
chr3 (143-210)||(23343389-23343456)
chr3 (160-194)||(44122965-44122999)
chr3 (140-220)||(15753680-15753760)
chr3 (142-178)||(20453620-20453656)
chr3 (160-220)||(49487909-49487969)
[»] chr7 (9 HSPs)
chr7 (160-216)||(22477987-22478043)
chr7 (145-210)||(34325318-34325383)
chr7 (140-220)||(341478-341558)
chr7 (140-220)||(8247004-8247084)
chr7 (143-210)||(16647436-16647503)
chr7 (143-210)||(32147491-32147558)
chr7 (145-210)||(20123990-20124055)
chr7 (160-200)||(7562203-7562243)
chr7 (140-220)||(26457688-26457768)
[»] chr8 (8 HSPs)
chr8 (145-210)||(23428279-23428344)
chr8 (140-220)||(29542307-29542387)
chr8 (140-220)||(30723179-30723259)
chr8 (162-211)||(8508980-8509029)
chr8 (160-209)||(28349445-28349494)
chr8 (147-199)||(17908822-17908874)
chr8 (140-220)||(30715401-30715481)
chr8 (110-196)||(36780845-36780929)
[»] chr5 (7 HSPs)
chr5 (85-150)||(18785722-18785787)
chr5 (140-220)||(16672401-16672481)
chr5 (140-220)||(23054560-23054640)
chr5 (143-194)||(24224290-24224341)
chr5 (143-210)||(30958603-30958670)
chr5 (143-200)||(1532755-1532812)
chr5 (140-220)||(35265726-35265806)
[»] chr1 (11 HSPs)
chr1 (140-220)||(18536155-18536235)
chr1 (160-210)||(40275301-40275351)
chr1 (140-220)||(31094124-31094204)
chr1 (140-220)||(37360131-37360211)
chr1 (143-210)||(15715635-15715702)
chr1 (141-216)||(22577286-22577361)
chr1 (143-210)||(33494004-33494071)
chr1 (144-210)||(3617813-3617879)
chr1 (160-194)||(26027739-26027773)
chr1 (145-194)||(15551851-15551900)
chr1 (140-220)||(11659097-11659177)
[»] scaffold0014 (1 HSPs)
scaffold0014 (140-220)||(110769-110849)
[»] scaffold0461 (1 HSPs)
scaffold0461 (143-210)||(13668-13735)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-210)||(346752-346819)
[»] scaffold0020 (1 HSPs)
scaffold0020 (145-194)||(122171-122220)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 21152173 - 21152388
Alignment:
Q  16 atgaagatgtgaagctaattaaatatgattgagttttcgcacaaaactataatgatgaaatacaagaactataaagtttgacatattattcaagagtatt 115  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  21152173 atgaagatgtgaagctaatttgatatgattgagttttcgcacaaaactataat-atgaaatacaagaactataaagtttaacatattattcaagagtatt 21152271  T
Q  116 ggtaagagtttactattgattttgaagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattca 215  Q
    ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21152272 ggtaagaatttactattgattttgaagagacatattcacgtgatgtgaattcaagaacttttccatatttaattaagtttagtagtacttgaaagattca 21152371  T
Q  216 atttacaaaaaagattt 232  Q
    ||||| |||||||||||    
T  21152372 atttataaaaaagattt 21152388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 21152409 - 21152541
Alignment:
Q  222 aaaaaagatttaatatagtgcatttgtatggttcacttaatattgatgattatatgaaact-cttnnnnnnnnntaatttttgtgatacgtacaatttgg 320  Q
    |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||          ||||||||| || | ||| |||||||    
T  21152409 aaaaaagatttgttacagtgcatttgtatggttcacttaatattgatgattatatgaaactcctagaaaaaatttaatttttgcgagatgtataatttgg 21152508  T
Q  321 actaccgaggagatgaactaatccaaatgaatg 353  Q
    |||||||||||||||||||||||||||||||||    
T  21152509 actaccgaggagatgaactaatccaaatgaatg 21152541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 2925328 - 2925263
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||| | | |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  2925328 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaag 2925263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 25692434 - 25692354
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    ||||||||||||||| | | |||| ||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  25692434 aagagacatattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 25692354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 53528645 - 53528696
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||||||| | |||||||||| ||||||||||||||| ||||||||    
T  53528645 agacatattcacttgaagtgaattcaataactttttcatacttgattaagtt 53528696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 12660451 - 12660371
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  12660451 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 12660371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 16326979 - 16326899
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  16326979 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 16326899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 26996175 - 26996231
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    |||||||||||||||||||||| ||| |||||||| ||||| || ||||||| ||||    
T  26996175 gtgaattcaagaactttttcatgcttgattaagttcagtagcacatgaaagactcaa 26996231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 30674965 - 30674885
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  30674965 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 30674885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 19569492 - 19569567
Alignment:
Q  134 attttgaagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaa 209  Q
    ||||| |||||| || ||||| | |||||||||||||||||||| ||| |||  ||||||||| |||||| |||||    
T  19569492 atttttaagagatatgttcacctgatgtgaattcaagaacttttgcattcttggttaagtttaatagtacatgaaa 19569567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 20193739 - 20193672
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  20193739 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 20193672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 53981106 - 53981173
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  53981106 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 53981173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 12747714 - 12747664
Alignment:
Q  166 tcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||| ||||    
T  12747714 tcaagaactttttcatacttgattaagttaagtagcacatgaaagactcaa 12747664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 13998981 - 13999034
Alignment:
Q  163 aattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    ||||||||||||||||||||||| ||||| || ||||| || ||||||| ||||    
T  13998981 aattcaagaactttttcatacttgattaaattcagtagcacatgaaagactcaa 13999034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 1875260 - 1875180
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||| ||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  1875260 aagagacatatttacctgaagttaattcaagaaccttttcttgcttgattaagtttagtattacatgaaaggctcaattta 1875180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 23192981 - 23193061
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | |||||||||||||||||||| |  || || |||||||||| ||| ||||||  ||||||||    
T  23192981 aagagacatatttacctgaagtgaattcaagaactttttcttgattgataaagtttagtattacatgaaaggctcaattta 23193061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 21290644 - 21290586
Alignment:
Q  136 tttgaagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtt 194  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  21290644 tttgaagagacatattcacttgaagtgaattcaagaactttttcatacttaattaagtt 21290586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 16444529 - 16444391
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcat 244  Q
    |||||||||| | | |||||||||||||||||||||||||| |||||||| ||||| || ||||||  |||| ||| | ||||||| |  || | |  ||    
T  16444529 acatattcacctgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatataaaagatgtgctacaatatat 16444430  T
Q  245 ttgtatggttcacttaatattgatgattatatgaaactc 283  Q
    |||||||| |||||| ||| |||||||||||| ||||||    
T  16444429 ttgtatggctcacttgatagtgatgattatattaaactc 16444391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 19088478 - 19088528
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  19088478 gtgaattcaagaactttttcatacttaattaagttcagtagcacatgaaag 19088528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 11311046 - 11311110
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaa 209  Q
    |||||||||| | | |||||||||||| ||||||||||||| |||||||| ||||| || |||||    
T  11311046 acatattcacctgaagtgaattcaagatctttttcatacttgattaagttcagtagcacatgaaa 11311110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 25446324 - 25446244
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| |||||||||| || ||| ||||||| ||||||||    
T  25446324 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttaatattacatgaaagactcaattta 25446244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 43288654 - 43288574
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | |||||||||||||||||||| | ||| || |||||||||| ||| ||||||  ||||||||    
T  43288654 aagagacatatttacctgaagtgaattcaagaactttttcttgcttgatgaagtttagtattacatgaaaggctcaattta 43288574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 635295 - 635362
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  635295 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 635362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 1524745 - 1524812
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  1524745 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 1524812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 7911109 - 7911042
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  7911109 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 7911042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 14889707 - 14889774
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  14889707 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 14889774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 14897796 - 14897863
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  14897796 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 14897863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 22429359 - 22429426
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  22429359 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 22429426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 22434953 - 22435020
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  22434953 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 22435020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 25229811 - 25229934
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcatttgtatggttcactt 259  Q
    |||||||||||||||||||||||||| ||||||||  |||| || || ||   |||| ||| |  ||| || | ||| | |  |||||||||||||||||    
T  25229811 gtgaattcaagaactttttcatacttgattaagttcggtagcacatggaatgctcaaattatatgaaatatgtgatacaatatatttgtatggttcactt 25229910  T
Q  260 aatattgatgattatatgaaactc 283  Q
     ||| |||||||||||| ||||||    
T  25229911 gatagtgatgattatatcaaactc 25229934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 17840157 - 17840226
Alignment:
Q  85 tataaagtttgacatattattcaagagtattggtaagagtttactattgattttgaagagacatattcac 154  Q
    ||||||||| | || ||| ||||||||||||||| | |   ||||||| |||||||||||||||||||||    
T  17840157 tataaagttgggcacattgttcaagagtattggtgaaatcctactattaattttgaagagacatattcac 17840226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 147 - 283
Target Start/End: Complemental strand, 17271262 - 17271126
Alignment:
Q  147 atattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcattt 246  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||| ||||| || ||||||  |||| ||| |  |||||| |  || | |  ||||    
T  17271262 atattcacttgaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatatgaaagatgtgttacaatttattt 17271163  T
Q  247 gtatggttcacttaatattgatgattatatgaaactc 283  Q
    ||||||||||||| ||| ||||| |||||||||||||    
T  17271162 gtatggttcacttgatagtgatggttatatgaaactc 17271126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 6932028 - 6932088
Alignment:
Q  150 ttcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||| ||| |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  6932028 ttcacctaaagtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaag 6932088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 14461799 - 14461742
Alignment:
Q  160 gtgaattcaagaa-ctttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    ||||||||||||| ||||||||||||| |||||||| ||||| || ||||||| ||||    
T  14461799 gtgaattcaagaatctttttcatacttgattaagttcagtagcacatgaaagactcaa 14461742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 18938 - 19062
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcatttgtatggttcactt 259  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||  |||| ||| | |||| || |  || | |  |||||||||| ||||||    
T  18938 gtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatggctcactt 19037  T
Q  260 aatattgatgattatatgaaactct 284  Q
     ||| |||||||||||| |||||||    
T  19038 gatagtgatgattatatcaaactct 19062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 29106 - 29230
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcatttgtatggttcactt 259  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||  |||| ||| | |||| || |  || | |  |||||||||| ||||||    
T  29106 gtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatggctcactt 29205  T
Q  260 aatattgatgattatatgaaactct 284  Q
     ||| |||||||||||| |||||||    
T  29206 gatagtgatgattatatcaaactct 29230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 39095 - 39219
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcatttgtatggttcactt 259  Q
    |||||||||||||||||||||||||| |||||||| ||||| || ||||||  |||| ||| | |||| || |  || | |  |||||||||  ||||||    
T  39095 gtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaaggctcaaattatataaaaaatgtgctacaatatatttgtatgactcactt 39194  T
Q  260 aatattgatgattatatgaaactct 284  Q
     ||| |||||||||||| |||||||    
T  39195 gatagtgatgattatatcaaactct 39219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 17032122 - 17032245
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaatttacaaaaaagatttaatatagtgcatttgtatggttcactt 259  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||| |||| ||| |  |||||| |  || |    |||||||||| ||||||    
T  17032122 gtgaattcaagaactttttcatacttgattaagtttagtagcacatgaaagactcaaattatatgaaagatgtgttacaagttatttgtatggctcactt 17032221  T
Q  260 aatattgatgattatatgaaactc 283  Q
     ||| ||||| |||||||||||||    
T  17032222 gatagtgatggttatatgaaactc 17032245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13925466 - 13925531
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||| | | ||||||||||||| |||||||||||| |||||||| ||||| || ||||||    
T  13925466 acatattcacctgaagtgaattcaagaaatttttcatacttgattaagttcagtagcacatgaaag 13925531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 13989845 - 13989918
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||| ||||    
T  13989845 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaagactcaa 13989918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 21882338 - 21882398
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  21882338 gtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 21882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 2169797 - 2169730
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  2169797 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 2169730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 9725830 - 9725763
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  9725830 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 9725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 10936113 - 10936180
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||||  | | ||||||||||| |||||||||||||| |||||||| ||||| || ||||||    
T  10936113 agacatattcatctgaagtgaattcaagtactttttcatacttgattaagttcagtagcacatgaaag 10936180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 23343389 - 23343456
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  23343389 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 23343456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 44122999 - 44122965
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||||||||||||||||||| ||||||||    
T  44122999 gtgaattcaagaactttttcatacttgattaagtt 44122965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 15753760 - 15753680
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | | | ||||||||||||| ||| ||||||  ||||||||    
T  15753760 aagagacatatttacctgaagttaattcaagaactttttcttgcatgattaagtttagtattacatgaaaggctcaattta 15753680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 20453620 - 20453656
Alignment:
Q  142 gagacatattcacttaatgtgaattcaagaacttttt 178  Q
    ||||||||||||||| | |||||||||||||||||||    
T  20453620 gagacatattcacttgaagtgaattcaagaacttttt 20453656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 49487969 - 49487909
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||||||||||| | ||| ||||||||||||| ||| || |||  ||||||||    
T  49487969 gtgaattcaagaactttttcttgcttgattaagtttagtattacatggaaggctcaattta 49487909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 22478043 - 22477987
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    |||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||    
T  22478043 gtgaattcaagaactttttcatacttgattaagtttagtagaacatgaaagactcaa 22477987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 34325318 - 34325383
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||| | | |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  34325318 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaag 34325383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 341558 - 341478
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | |||||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  341558 aagagacatatttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 341478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 8247004 - 8247084
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||| ||||||||    
T  8247004 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaagactcaattta 8247084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 16647436 - 16647503
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  16647436 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 16647503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 32147491 - 32147558
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  32147491 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 32147558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 20123990 - 20124055
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||| | | | |||||||||||||||||| ||||| |||||||| ||||| || ||||||    
T  20123990 acatattcacctgaagggaattcaagaactttttcgtacttgattaagttcagtagcacatgaaag 20124055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 7562203 - 7562243
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtag 200  Q
    ||||||||||||| |||||||||||| |||||||| |||||    
T  7562203 gtgaattcaagaattttttcatacttgattaagttcagtag 7562243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 26457768 - 26457688
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    ||||||||||||||| | | |||| |||||| | |||||| | ||| |||||||||||||  || ||||||| ||||||||    
T  26457768 aagagacatattcacctgaagtgagttcaaggaatttttcttgcttgattaagtttagtatcacatgaaagactcaattta 26457688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 23428279 - 23428344
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||| | | |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  23428279 acatattcacctcaagtgaattcaagaactttttcatacttgattaagttaagtagcacatgaaag 23428344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 29542307 - 29542387
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||| |||||||| | |  ||||||||||||||||||| ||||| |||||||||||||  || ||||||| ||||||||    
T  29542307 aagagatatattcacctgaaatgaattcaagaactttttcttacttgattaagtttagtatcacatgaaagactcaattta 29542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 30723259 - 30723179
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    ||||||||||||||| | | |||| ||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  30723259 aagagacatattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 30723179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 8508980 - 8509029
Alignment:
Q  162 gaattcaagaactttttcatacttaattaagtttagtagtacttgaaaga 211  Q
    |||||||||||||||||||||||| | |||||||||||| || |||||||    
T  8508980 gaattcaagaactttttcatacttgaataagtttagtagcacatgaaaga 8509029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 28349494 - 28349445
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaa 209  Q
    |||||||||||||||||||||||||| |||||||| ||||| || |||||    
T  28349494 gtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaa 28349445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 17908822 - 17908874
Alignment:
Q  147 atattcacttaatgtgaattcaagaactttttcatacttaattaagtttagta 199  Q
    |||||||| | | |||||||||||||||||||||||||| |||||||| ||||    
T  17908822 atattcacctgaagtgaattcaagaactttttcatacttgattaagttcagta 17908874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 30715481 - 30715401
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  30715481 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 30715401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 36780845 - 36780929
Alignment:
Q  110 agtattggtaagagtttactattgattttgaagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagttta 196  Q
    ||||||||||| ||| ||| |||||||||||||||| ||||||||||   ||||||| |  || |||||||||||| || |||||||    
T  36780845 agtattggtaaaagtctaccattgattttgaagagatatattcacttgtggtgaattga--aattttttcatacttgataaagttta 36780929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 18785787 - 18785722
Alignment:
Q  85 tataaagtttgacatattattcaagagtattggtaagagtttactattgattttgaagagacatat 150  Q
    ||||||||||||| |||| |||||||| |||||| | | ||||||||| |||||||||||||||||    
T  18785787 tataaagtttgacttattgttcaagagaattggtgaaaatttactattaattttgaagagacatat 18785722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 16672401 - 16672481
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  16672401 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 16672481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 23054640 - 23054560
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  23054640 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 23054560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 24224341 - 24224290
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||||| | | ||||||| |||||||||||||||||| ||||||||    
T  24224341 agacatattcacctgaagtgaatttaagaactttttcatacttgattaagtt 24224290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 30958670 - 30958603
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  30958670 agacatattcaccataagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 30958603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 1532812 - 1532755
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtag 200  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| |||||    
T  1532812 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtag 1532755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 35265806 - 35265726
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||| ||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  35265806 aagagacatatttacctgaagttaattcaagaaccttttcttgcttgattaagtttagtactacatgaaaggctcaattta 35265726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 18536235 - 18536155
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | |||||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  18536235 aagagacatatttacctgaagtgaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 18536155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 40275351 - 40275301
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    |||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  40275351 gtgaattcaagaactttttcatacttgattaagttcagtagcacatgaaag 40275301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 31094204 - 31094124
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||| |||||| | | |||| ||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  31094204 aagagacaaattcacctgaagtgatttcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 31094124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Complemental strand, 37360211 - 37360131
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  37360211 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 37360131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 15715635 - 15715702
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  15715635 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 15715702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 22577361 - 22577286
Alignment:
Q  141 agagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaa 216  Q
    |||||||||||||  | | |||||||||||||||||||||||||| | |||||| ||| | || ||||||| ||||    
T  22577361 agagacatattcaactgaagtgaattcaagaactttttcatacttgaataagttcagtggcacatgaaagactcaa 22577286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 33494071 - 33494004
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  33494071 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 33494004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 3617879 - 3617813
Alignment:
Q  144 gacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||| | | |||||||||| ||||||||||||||  |||||||| ||||| || ||||||    
T  3617879 gacatattcacctgaagtgaattcaataactttttcatactggattaagttgagtagcacatgaaag 3617813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 26027739 - 26027773
Alignment:
Q  160 gtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||||||||||||||||||| ||||||||    
T  26027739 gtgaattcaagaactttttcatacttgattaagtt 26027773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 15551851 - 15551900
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||| ||| | |||||||||||||||||| ||||| ||||||||    
T  15551851 acatattcacctaaagggaattcaagaactttttcttacttgattaagtt 15551900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 11659097 - 11659177
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||| ||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  11659097 aagagacatatttacctgaagtaaattcaaaaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 11659177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 110769 - 110849
Alignment:
Q  140 aagagacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaagattcaattta 220  Q
    |||||||||||| || | | || ||||||||||||||||| | ||| ||||||||||||| ||| ||||||  ||||||||    
T  110769 aagagacatatttacctgaagttaattcaagaactttttcttgcttgattaagtttagtattacatgaaaggctcaattta 110849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 13735 - 13668
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  13735 agacatattcaccataagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 13668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 346819 - 346752
Alignment:
Q  143 agacatattcacttaatgtgaattcaagaactttttcatacttaattaagtttagtagtacttgaaag 210  Q
    ||||||||||||   | |||||| ||||||||||||||||||| |||||||| ||||| || ||||||    
T  346819 agacatattcaccagaagtgaatccaagaactttttcatacttgattaagttcagtagcacatgaaag 346752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 122171 - 122220
Alignment:
Q  145 acatattcacttaatgtgaattcaagaactttttcatacttaattaagtt 194  Q
    |||||||||| | | |||||||||||||||||||||||||| | ||||||    
T  122171 acatattcacctgaagtgaattcaagaactttttcatacttgactaagtt 122220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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