View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_22 (Length: 329)
Name: NF14282_high_22
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 156572 - 156353
Alignment:
| Q |
17 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
116 |
Q |
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| T |
156572 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
156473 |
T |
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| Q |
117 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
216 |
Q |
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| T |
156472 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
156373 |
T |
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| Q |
217 |
gttgactccttagttgttgt |
236 |
Q |
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| T |
156372 |
gttgactccttagttgttgt |
156353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 156217 - 156155
Alignment:
| Q |
250 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgt |
312 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgt |
156155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
122 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
221 |
Q |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
222 |
ctccttagttgttgt |
236 |
Q |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
163 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
236 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
141 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
228 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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