View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_high_3 (Length: 582)

Name: NF14282_high_3
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_high_3
NF14282_high_3
[»] chr5 (5 HSPs)
chr5 (258-567)||(3938686-3938972)
chr5 (150-245)||(3938545-3938643)
chr5 (38-104)||(16914271-16914337)
chr5 (44-105)||(39933551-39933612)
chr5 (71-115)||(22967188-22967232)
[»] chr2 (3 HSPs)
chr2 (17-115)||(3769297-3769395)
chr2 (76-115)||(24437928-24437968)
chr2 (71-115)||(44944079-44944123)
[»] chr1 (4 HSPs)
chr1 (17-115)||(3928295-3928393)
chr1 (40-110)||(23347009-23347079)
chr1 (42-108)||(51184524-51184589)
chr1 (40-110)||(15248879-15248949)
[»] chr6 (1 HSPs)
chr6 (17-115)||(30373042-30373140)
[»] chr4 (2 HSPs)
chr4 (24-115)||(6353652-6353743)
chr4 (36-96)||(56532714-56532774)
[»] chr3 (5 HSPs)
chr3 (27-110)||(36501593-36501676)
chr3 (52-110)||(36496981-36497040)
chr3 (38-110)||(29429926-29429998)
chr3 (76-115)||(35420348-35420388)
chr3 (70-110)||(35653124-35653164)
[»] scaffold0025 (1 HSPs)
scaffold0025 (36-96)||(150368-150428)
[»] chr7 (9 HSPs)
chr7 (351-429)||(12651704-12651782)
chr7 (350-429)||(12504948-12505027)
chr7 (442-504)||(12485932-12485994)
chr7 (442-504)||(12507364-12507426)
chr7 (442-504)||(12658250-12658312)
chr7 (71-115)||(3772599-3772643)
chr7 (36-96)||(13784876-13784936)
chr7 (36-96)||(23902775-23902835)
chr7 (263-331)||(47606574-47606642)
[»] chr8 (1 HSPs)
chr8 (48-88)||(32318075-32318115)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 258 - 567
Target Start/End: Original strand, 3938686 - 3938972
Alignment:
Q  258 ctgcaacaagcatcctctccaagaaatggaaccaactatggccctcacttctcaatcttgattttgacgaccaaggctctccaaacttcttagcttttcg 357  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3938686 ctgcaacaagcatcctctccaagaaatggaaccaactatggctctcagttctcactcttgattttgacgaccaaggctctccaaacttcttagcttttcg 3938785  T
Q  358 acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtggcttcattcaaatatgtgatccatatgat 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||| ||||||||||||||||    
T  3938786 acattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattcc------------------ttcaaagatgtgatccatatgat 3938867  T
Q  458 atcaatcgattcatttctgttgctgtaaaacgaggaattgataatcttaccttaccttagacttgtctggcactgatgatgattttcaaatccgattgga 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938868 atcaatcgattcatttctgttgctgtaaaacgaggaattgataat-----cttaccttagacttgtctggcactgatgatgattttcaaatccgattgga 3938962  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 3938545 - 3938643
Alignment:
Q  150 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatatggac---ataatcagcacattgccagactccg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||    
T  3938545 gtgattatcacaaatacattatttgattctctttctcacttgaaatgtcctcccctactccgaatgtggacataataatcagcacattgccagactccg 3938643  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 16914271 - 16914337
Alignment:
Q  38 tgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctc 104  Q
    |||||| |||||||||||| || |||| |||  |||| |||||||||||||||||||||||||||||    
T  16914271 tgaacctttaagattgatctaatggttataatataactctctcatctctcacaataaaaaccctctc 16914337  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 39933551 - 39933612
Alignment:
Q  44 gttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctca 105  Q
    |||| |||||||||||||||| | | ||||| |||| |||||||||||||||||| ||||||    
T  39933551 gttatgattgatccaagggttatgatttaaccctcttatctctcacaataaaaacactctca 39933612  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22967188 - 22967232
Alignment:
Q  71 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||    
T  22967188 taaccctctcatctctcacaataaaaaacctctcacttgatatgc 22967232  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 3769297 - 3769395
Alignment:
Q  17 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769297 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 3769395  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 24437928 - 24437968
Alignment:
Q  76 ctctcatctctcacaataaaaa-ccctctcacttgaaatgc 115  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  24437928 ctctcatctctcacaataaaaagccctctcacttgatatgc 24437968  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 44944079 - 44944123
Alignment:
Q  71 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||| |||||||||||||||||||||| | |||||||||| ||||    
T  44944079 taaccctctcatctctcacaataaaaaacatctcacttgatatgc 44944123  T

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Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 3928393 - 3928295
Alignment:
Q  17 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3928393 cacaaaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctcttacttgaaatgc 3928295  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 23347079 - 23347009
Alignment:
Q  40 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 110  Q
    ||||||||| |||||| |||||||| ||| ||||| ||||||||||| | ||||||||  |||||||||||    
T  23347079 aaccgttaatattgattcaagggttataatttaaccctctcatctcttataataaaaaatctctcacttga 23347009  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 51184589 - 51184524
Alignment:
Q  42 ccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcactt 108  Q
    ||||| |||| ||||||| |||| ||| ||||| |||||||||||||||||||||| ||||||||||    
T  51184589 ccgttgagatcgatccaaaggttataatttaaccctctcatctctcacaataaaaa-cctctcactt 51184524  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 15248949 - 15248879
Alignment:
Q  40 aaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 110  Q
    |||| |||| ||| ||||||||||| | | ||||| ||||||||||||||  ||||| |||||||||||||    
T  15248949 aaccattaatattaatccaagggttatgatttaaccctctcatctctcactgtaaaagccctctcacttga 15248879  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 30373042 - 30373140
Alignment:
Q  17 cacagaagtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30373042 cacataagtaaagtttcattttgaaccgttaagattgatccaagggttgtaatttaacactctcatctctcataataaaaaccctctcacttgaaatgc 30373140  T

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Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 6353743 - 6353652
Alignment:
Q  24 gtaaagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  6353743 gtaaagtttcattttgaaccgttaagattgatccaagggttataacttaacactctcatctctcataatgaaaaccctctcacttgaaatgc 6353652  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 56532774 - 56532714
Alignment:
Q  36 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 96  Q
    |||||||||||||||||| | ||| |||||||| ||||| ||||||||||  |||||||||    
T  56532774 tttgaaccgttaagattggttcaatggttgtaatttaaccctctcatctcatacaataaaa 56532714  T

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Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 36501593 - 36501676
Alignment:
Q  27 aagtttcattttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 110  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||    
T  36501593 aagtttcatcttgaacagttaagattgatccaagggttgtgacttaatcctctcatctctcacaataaaaaccctctcgcttga 36501676  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 36497040 - 36496981
Alignment:
Q  52 tgatccaagggttgtaacttaacactctcatctctcacaataaaaacc-ctctcacttga 110  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||| |||||||||||    
T  36497040 tgatctaagggttgtgatttaaccctctcatctctcacaataacaaccactctcacttga 36496981  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 29429998 - 29429926
Alignment:
Q  38 tgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaaaccctctcacttga 110  Q
    |||||| |||||||||||| || |||| ||  |||   |||||| ||||||||||||||||||||||| ||||    
T  29429998 tgaaccattaagattgatctaatggttatagtttagtcctctcacctctcacaataaaaaccctctcatttga 29429926  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 35420348 - 35420388
Alignment:
Q  76 ctctcatctctcacaataaaaa-ccctctcacttgaaatgc 115  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  35420348 ctctcatctctcacaataaaaagccctctcacttgatatgc 35420388  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 35653164 - 35653124
Alignment:
Q  70 ttaacactctcatctctcacaataaaaaccctctcacttga 110  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  35653164 ttaaccctctcatctctcacaataaaactcctctcacttga 35653124  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 150428 - 150368
Alignment:
Q  36 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 96  Q
    ||||||||||||||||||||| ||||||| |   ||||| |||||||||||||||||||||    
T  150428 tttgaaccgttaagattgatcgaagggttatggtttaaccctctcatctctcacaataaaa 150368  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 429
Target Start/End: Original strand, 12651704 - 12651782
Alignment:
Q  351 cttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg 429  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| |  ||| ||| |||| ||| ||||| |||||||||||    
T  12651704 cttttcgactttttgtctactcagtcatgctcacgcgtgacccaacctcgccaatccaatcgttccgactcaaatgtgg 12651782  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 429
Target Start/End: Original strand, 12504948 - 12505027
Alignment:
Q  350 gcttttcgacattttgtctacttagtcatgctcatgcgtgacgcttccttgcccatccgatcattccgtctcaaatgtgg 429  Q
    |||||||||| ||| ||||||| |||||||||||| |||||| |  | |||||||||||||  ||||  |||||||||||    
T  12504948 gcttttcgacttttcgtctactcagtcatgctcatccgtgaccccacattgcccatccgattgttccacctcaaatgtgg 12505027  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 12485932 - 12485994
Alignment:
Q  442 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 504  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12485932 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12485994  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 12507364 - 12507426
Alignment:
Q  442 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 504  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12507364 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12507426  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 12658250 - 12658312
Alignment:
Q  442 atgtgatccatatgatatcaatcgattcatttctgttgctgtaaaacgaggaattgataatct 504  Q
    |||||||||| ||||||||||||||||  || |||||||||| |||  ||||||||| |||||    
T  12658250 atgtgatccacatgatatcaatcgatttgttcctgttgctgtcaaaaaaggaattgagaatct 12658312  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 3772643 - 3772599
Alignment:
Q  71 taacactctcatctctcacaataaaaaccctctcacttgaaatgc 115  Q
    |||| |||||||||||||||||||||| ||||||| |||| ||||    
T  3772643 taaccctctcatctctcacaataaaaaacctctcatttgatatgc 3772599  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 13784876 - 13784936
Alignment:
Q  36 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 96  Q
    ||||||||||||| |||||||||| |||| |   ||||  |||||||||||||||||||||    
T  13784876 tttgaaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 13784936  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 23902835 - 23902775
Alignment:
Q  36 tttgaaccgttaagattgatccaagggttgtaacttaacactctcatctctcacaataaaa 96  Q
    ||||||||||||| |||||||||| |||| |   ||||  |||||||||||||||||||||    
T  23902835 tttgaaccgttaaaattgatccaaaggttatggtttaatcctctcatctctcacaataaaa 23902775  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 47606642 - 47606574
Alignment:
Q  263 acaagcatcctctccaagaaatggaaccaactatggccctcacttctcaatcttgattttgacgaccaa 331  Q
    |||||||||||||| |||| |||||||| |||||||| |||| |||| ||| || | || |||||||||    
T  47606642 acaagcatcctctcaaagagatggaacccactatggctctcagttcttaattttcacttcgacgaccaa 47606574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 32318115 - 32318075
Alignment:
Q  48 agattgatccaagggttgtaacttaacactctcatctctca 88  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  32318115 agattgatccaagggttgtaatttaaccctctcatctctca 32318075  T

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