View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_high_33 (Length: 260)

Name: NF14282_high_33
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_high_33
NF14282_high_33
[»] chr5 (10 HSPs)
chr5 (1-256)||(13454179-13454417)
chr5 (172-247)||(13447235-13447310)
chr5 (162-249)||(13451105-13451192)
chr5 (156-247)||(13388972-13389063)
chr5 (156-229)||(13385151-13385224)
chr5 (171-247)||(13413339-13413415)
chr5 (156-247)||(13393379-13393470)
chr5 (144-247)||(13419684-13419787)
chr5 (177-247)||(13426575-13426645)
chr5 (177-243)||(13379226-13379292)
[»] chr4 (3 HSPs)
chr4 (152-229)||(47601524-47601601)
chr4 (16-50)||(13238328-13238362)
chr4 (16-50)||(13238548-13238582)
[»] scaffold0131 (2 HSPs)
scaffold0131 (16-50)||(22066-22100)
scaffold0131 (16-50)||(22286-22320)
[»] chr1 (2 HSPs)
chr1 (16-50)||(27343899-27343933)
chr1 (16-50)||(27344119-27344153)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 13454417 - 13454179
Alignment:
Q  1 cggaccttcataaggcgaagaatgaatggggcactacgaactatccactagttcccgggtaagctttctaattttactgcattttnnnnnnnccaaacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  13454417 cggaccttcataaggcgaagaatgaatggggcactacgaactatccactagttcccgggtaagctttctaattttactgcatttt--------------- 13454333  T
Q  101 ataaatcaagatataaattcaatttgaatctaattggtgtaaaaatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaa 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13454332 --aaatcaagatataaattcaatttgaatctaattggtgtaaaaatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaa 13454235  T
Q  201 aagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttctcactc 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13454234 aagttcaaagttggagacagagtaggtgtgggatgcttggttgattcttgtcactc 13454179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 13447310 - 13447235
Alignment:
Q  172 tagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattc 247  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||||| |||||| ||||||| | ||||||||||    
T  13447310 tagtaacagaggtgggaagcaaagtaaaaaagtttaaagttggagacaaagtaggggtgggatacatggttgattc 13447235  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 13451192 - 13451105
Alignment:
Q  162 attgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattctt 249  Q
    |||||||| ||||||||| | || ||||||||||||  |||||||||| ||| |||||||||  ||||||||||||| ||||||||||    
T  13451192 attgttgggatagttacacaggttggaagcaaagtggtaaagttcaaaattgaagacagagttagtgtgggatgcttcgttgattctt 13451105  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 13388972 - 13389063
Alignment:
Q  156 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattc 247  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||  |||||||||| |||||||||| ||||||||| || | | ||||||||||    
T  13388972 catgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgttggctacatggttgattc 13389063  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 13385151 - 13385224
Alignment:
Q  156 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgt 229  Q
    ||||| |||||||| ||||| ||| | ||||||||||||||  |||||||||| |||||||||| |||||||||    
T  13385151 catgagattgttggtatagtgacaaaggtgggaagcaaagtagaaaagttcaatgttggagacaaagtaggtgt 13385224  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 13413415 - 13413339
Alignment:
Q  171 atagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattc 247  Q
    ||||| |||||||| |||||||||||| | ||||| ||||||||||||| ||||||||| || | |||| |||||||    
T  13413415 atagtaacagaagtaggaagcaaagtggagaagtttaaagttggagacaaagtaggtgttggctacttgattgattc 13413339  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 13393379 - 13393470
Alignment:
Q  156 catgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattc 247  Q
    ||||| |||| ||| ||||| || || || |||||||||||  | ||||||||| ||||||||| ||| |||||||||||||| ||||||||    
T  13393379 catgagattgctggtatagtgacggaggtaggaagcaaagtagagaagttcaaaattggagacaaagtgggtgtgggatgcttagttgattc 13393470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 13419787 - 13419684
Alignment:
Q  144 aatatatgcagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttg 243  Q
    |||| |||||| |||||| |||  || ||||| || || || |||||||||||  ||||||| ||||||||||||| ||| |||||||||| | ||||||    
T  13419787 aataaatgcaggcatgaacttgcgggtatagtaaccgaggttggaagcaaagtagaaaagtttaaagttggagacaaagttggtgtgggatacatggttg 13419688  T
Q  244 attc 247  Q
    ||||    
T  13419687 attc 13419684  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 13426645 - 13426575
Alignment:
Q  177 acagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttgattc 247  Q
    ||||| || |||||||||||  ||||||| ||||||||||||| |||||| ||||||| | ||||||||||    
T  13426645 acagaggttggaagcaaagtagaaaagtttaaagttggagacaaagtaggagtgggatacatggttgattc 13426575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 13379292 - 13379226
Alignment:
Q  177 acagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgtgggatgcttggttg 243  Q
    ||||| ||||||||||| ||||||||  ||||||||||||| || || |||||||| ||| ||||||    
T  13379292 acagaggtgggaagcaaggtgaaaaacatcaaagttggagatagggttggtgtggggtgcatggttg 13379226  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 229
Target Start/End: Complemental strand, 47601601 - 47601524
Alignment:
Q  152 cagacatgaaattgttggcatagttacagaagtgggaagcaaagtgaaaaagttcaaagttggagacagagtaggtgt 229  Q
    ||||||||| |||||||| ||||| ||| ||||||||||||||||  ||||||||||||||||||||| ||| |||||    
T  47601601 cagacatgagattgttggtatagtgacaaaagtgggaagcaaagtagaaaagttcaaagttggagacaaagtgggtgt 47601524  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 13238362 - 13238328
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||||||||||||||||||||||||||||||||||    
T  13238362 cgaagaatgaatggggcactacgaactatccacta 13238328  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 13238582 - 13238548
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  13238582 cgaaaaatgaatggggcactacgaactatccacta 13238548  T

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Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 22066 - 22100
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||||||||||||||||||||||||||||||||||    
T  22066 cgaagaatgaatggggcactacgaactatccacta 22100  T

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Target: scaffold0131; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 22286 - 22320
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||||||||||||||||||||||||||||| ||||    
T  22286 cgaagaatgaatggggcactacgaactatcaacta 22320  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 27343899 - 27343933
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||||||||||||||||||||||||||||||||||    
T  27343899 cgaagaatgaatggggcactacgaactatccacta 27343933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 27344119 - 27344153
Alignment:
Q  16 cgaagaatgaatggggcactacgaactatccacta 50  Q
    |||||||||||||||||||||||||||||||||||    
T  27344119 cgaagaatgaatggggcactacgaactatccacta 27344153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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