View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_35 (Length: 253)
Name: NF14282_high_35
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 30708036 - 30708253
Alignment:
| Q |
13 |
aatatcaagttttatttgaaaacaacaattatccattaaaaagttatatatttaagtaaaaaatagataagttaaaatgagaaattactatgttaaactt |
112 |
Q |
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| T |
30708036 |
aatatcaagttttatttgaaaacaacaattatccattaaaaagttatatatttaa-taaaaaatatataagttaaaatgaaaaattactatgttaaactt |
30708134 |
T |
|
| Q |
113 |
cttaatgtatacgaatttacacatgataaaaaccctctctatttaacttacccgatcacccaagcatcactttcattttggaagaaaccagaatgaggaa |
212 |
Q |
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| T |
30708135 |
cttaacgaatgcgaatttacacataataaaaaccctctctatttaacttacccgatcacccaagcatcactttcattttggaagaaaccagaatgaggaa |
30708234 |
T |
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| Q |
213 |
aattaaagattattcgatc |
231 |
Q |
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| T |
30708235 |
aattaaagattattcgatc |
30708253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 47707999 - 47707914
Alignment:
| Q |
31 |
aaaacaacaattatccattaaaaagttatatatttaagtaaaaaatagataagttaaaatgagaaattactatgttaaacttcttaa |
117 |
Q |
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| T |
47707999 |
aaaacaacaattatttattaaaaagttatatatttaa-tacaaaatgtataagtttcaattcaaaattactattttaaacttcttaa |
47707914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 11680133 - 11680097
Alignment:
| Q |
31 |
aaaacaacaattatccattaaaaagttatatatttaa |
67 |
Q |
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| T |
11680133 |
aaaacaacaattatttattaaaaagttatatatttaa |
11680097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 34817603 - 34817642
Alignment:
| Q |
28 |
ttgaaaacaacaattatccattaaaaagttatatatttaa |
67 |
Q |
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| T |
34817603 |
ttgaaaacaacaattatttattaaaaagttatatatttaa |
34817642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 2096925 - 2096970
Alignment:
| Q |
22 |
ttttatttgaaaacaacaattatccattaaaaagttatatatttaa |
67 |
Q |
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| T |
2096925 |
ttttattgaaaaacaacaattatttattaaaaagttatatatttaa |
2096970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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