View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_4 (Length: 543)
Name: NF14282_high_4
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_4 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 141831 - 142014
Alignment:
| Q |
19 |
aaaacctaacaaattttttagttcnnnnnnngcatttggatctcttctctgttttccaccttctttcaagacttgtaagttccgtgtaactctcccttat |
118 |
Q |
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| T |
141831 |
aaaacctaacaaattttttagttctttttt-gcatttggatctcttctctgttttccaccttctttcaagacttgtaagttccgtgtaactctcccttgt |
141929 |
T |
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| Q |
119 |
gagttttcaagttatttatatttatttttatatgattgagatatatttcatccttcaaagtttaacctaatctttattagttctc |
203 |
Q |
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| T |
141930 |
gagttttcaagttatttatatttatttttatatgattgagatatatttcatccttcaaagtttaacctaatctttattagttctc |
142014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 379 - 533
Target Start/End: Original strand, 142192 - 142346
Alignment:
| Q |
379 |
atctgtgttactataatgtaatatattgctaatgattatgtttaatttgattcctgtaggtnnnnnnnggaagagaaattcgtgttactatgagttctga |
478 |
Q |
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| T |
142192 |
atctgtgttactataatgtaatatattgctaatgattatgtttaatttgattcctataggtaaaaaaaggaagagaaattcgtgttactatgagttctga |
142291 |
T |
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| Q |
479 |
aactataccacaaattcagcacataatcaacattccagaaatcattgaacctatg |
533 |
Q |
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| T |
142292 |
aactataccacaaattcagcacataatcaacattccagaaatcattgaacctatg |
142346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 142050 - 142105
Alignment:
| Q |
237 |
aactgtgaaatcttgctagaaggtaatatatattgctagtaatttattttaatgta |
292 |
Q |
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| T |
142050 |
aactgtgaaatcttgctagaaggtaatatatattgctagtaatttattttaatgta |
142105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 485 - 533
Target Start/End: Original strand, 292471 - 292519
Alignment:
| Q |
485 |
accacaaattcagcacataatcaacattccagaaatcattgaacctatg |
533 |
Q |
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| T |
292471 |
accacagattcagcacataatcaacattccagagatcattgaacctatg |
292519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 533
Target Start/End: Complemental strand, 45961367 - 45961326
Alignment:
| Q |
492 |
attcagcacataatcaacattccagaaatcattgaacctatg |
533 |
Q |
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| T |
45961367 |
attcagcacataatcatcattccagaaagcattgaacctatg |
45961326 |
T |
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