View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_high_9 (Length: 489)
Name: NF14282_high_9
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 1197354 - 1196896
Alignment:
| Q |
14 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197354 |
aatatcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaact |
1197255 |
T |
|
| Q |
114 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
213 |
Q |
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| T |
1197254 |
catcaaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaac |
1197155 |
T |
|
| Q |
214 |
atcatcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1197154 |
atcatcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcat |
1197055 |
T |
|
| Q |
314 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
413 |
Q |
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| T |
1197054 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
1196955 |
T |
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| Q |
414 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgt |
472 |
Q |
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| T |
1196954 |
ttttgaagatggttgaagatcatggaaagaataaggacaagttttcaaatcaagaatgt |
1196896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 450
Target Start/End: Original strand, 7289231 - 7289664
Alignment:
| Q |
17 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaaaaatagcaaactcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| | |||||||| ||||| || |
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| T |
7289231 |
atcatcaccatgtcaatggatcaaaagaaatctaacaaaattagagaaatcgttagacttcaacaaatcctta-gaaatgaaaaaaaatagaaaacttat |
7289329 |
T |
|
| Q |
117 |
caaaaaccacagccaacaccaccaccatcactagaagcaaaagcatgaagtttctaaaaagaacactttctctttctgaacgtgaaggaggaacaacatc |
216 |
Q |
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| ||| | | ||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
7289330 |
-acaaattaaa-ccaacaccaacaccatcaataaaagcaaaatcatgaagtttctaaaaagaacactttctctatctgaacgtgaaggaggaataacatc |
7289427 |
T |
|
| Q |
217 |
atcaaacaacaatggttctgttccaaaagggtatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgggtcat |
313 |
Q |
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|||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
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| T |
7289428 |
atcaaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgtgtcat |
7289527 |
T |
|
| Q |
314 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| |
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| T |
7289528 |
caagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttgagtgta |
7289627 |
T |
|
| Q |
414 |
ttttgaagatggttgaagatcatggaaagaataagga |
450 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7289628 |
ttttgaagatggttgaagatcatggaaagaataagga |
7289664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 252 - 431
Target Start/End: Original strand, 50471139 - 50471318
Alignment:
| Q |
252 |
tagctgtttgtgttggagaagagcttaagaggttcatcataccaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaaga |
351 |
Q |
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|||| ||||||||||| | ||| ||||| ||||| | |||||||| || ||||||| ||||||||| ||||| || | | ||||||||||||||||| |
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| T |
50471139 |
tagccgtttgtgttggtgtagaccttaacaggtttgttataccaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaaga |
50471238 |
T |
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| Q |
352 |
atttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttgagagtattttgaagatggttgaag |
431 |
Q |
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|||||||||| ||||| ||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||||| |
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| T |
50471239 |
atttgggtttgaacaaactggtgttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 50470930 - 50470991
Alignment:
| Q |
40 |
aaagaaatctaacaaaattagagaaattgttagacttcaacagatccttaagaaatggagaa |
101 |
Q |
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||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50470930 |
aaagaaacctaacaaaatcagagaaatcgttagacttcaacagatccttaagaaatggagaa |
50470991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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