View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_low_10 (Length: 479)

Name: NF14282_low_10
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_low_10
NF14282_low_10
[»] chr8 (4 HSPs)
chr8 (11-463)||(20862855-20863307)
chr8 (213-282)||(1675100-1675169)
chr8 (212-279)||(16685482-16685549)
chr8 (64-118)||(1674951-1675005)
[»] chr6 (37 HSPs)
chr6 (9-294)||(4514302-4514587)
chr6 (16-294)||(4506530-4506808)
chr6 (19-284)||(3172417-3172682)
chr6 (9-280)||(4266358-4266632)
chr6 (19-303)||(4561180-4561464)
chr6 (19-305)||(4626627-4626913)
chr6 (19-301)||(4574984-4575266)
chr6 (9-279)||(4458261-4458534)
chr6 (19-314)||(4461799-4462094)
chr6 (28-284)||(4602477-4602733)
chr6 (19-302)||(4470479-4470762)
chr6 (19-148)||(4299148-4299277)
chr6 (19-315)||(4481369-4481665)
chr6 (192-284)||(4517170-4517262)
chr6 (213-281)||(4593104-4593172)
chr6 (213-316)||(4489520-4489623)
chr6 (213-284)||(4617895-4617966)
chr6 (213-281)||(4564584-4564652)
chr6 (208-284)||(4568901-4568975)
chr6 (16-108)||(4592907-4592999)
chr6 (37-148)||(4622834-4622945)
chr6 (28-82)||(4259547-4259601)
chr6 (212-273)||(4557994-4558055)
chr6 (232-281)||(4571861-4571910)
chr6 (223-315)||(4503629-4503721)
chr6 (28-108)||(4484150-4484232)
chr6 (56-135)||(4503725-4503804)
chr6 (217-279)||(4586510-4586572)
chr6 (16-97)||(4489733-4489814)
chr6 (217-274)||(4580915-4580972)
chr6 (232-277)||(4612916-4612961)
chr6 (47-119)||(4255977-4256049)
chr6 (232-304)||(4259325-4259397)
chr6 (213-294)||(4484020-4484102)
chr6 (36-166)||(4571665-4571795)
chr6 (50-103)||(4617732-4617785)
chr6 (64-104)||(4568765-4568805)
[»] chr5 (1 HSPs)
chr5 (9-279)||(24103665-24103938)
[»] chr3 (2 HSPs)
chr3 (204-305)||(1281978-1282078)
chr3 (50-126)||(1281824-1281900)
[»] scaffold0477 (1 HSPs)
scaffold0477 (19-126)||(4038-4145)
[»] scaffold0199 (2 HSPs)
scaffold0199 (213-282)||(337-406)
scaffold0199 (64-118)||(188-242)
[»] scaffold0288 (1 HSPs)
scaffold0288 (37-148)||(3045-3156)
[»] chr7 (1 HSPs)
chr7 (19-148)||(3087096-3087225)


Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 20863307 - 20862855
Alignment:
Q  11 caaaggggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20863307 caaaagggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggc 20863208  T
Q  111 tctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaattt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20863207 tctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaattt 20863108  T
Q  211 cgcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttgacgcta 310  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  20863107 cgcaaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatcataactccaaaagtcagtagcttgacacta 20863008  T
Q  311 tatataacaaggttttaaatcatggccgtaacatcaattgcaatcgtgtcccgattttgatattatacataaaatcgaaaccaaatatgggtgatacaaa 410  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20863007 tatataacaaggttttaaatcatggctgtaacatcaattgcaatcgtgtcccgattttgatattatacataaaatcgaaaccaaatatgggtgatacaaa 20862908  T
Q  411 ctcaagaaagaagaggagtatagattgttacctttgaggggtatgacaccttt 463  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20862907 ctcaataaagaagaggagtatagattgttacctttgaggggtatgacaccttt 20862855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 1675100 - 1675169
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcat 282  Q
    ||||||||||||||| || ||||| || ||||||||||||||||||||||  ||||||||||||||||||    
T  1675100 caaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat 1675169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 16685549 - 16685482
Alignment:
Q  212 gcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatat 279  Q
    |||| |||||||| || || |||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  16685549 gcaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 1674951 - 1675005
Alignment:
Q  64 acatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    |||||||||||||| |||||||||||||| |||| ||| | |||| |||||||||    
T  1674951 acatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaa 1675005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 4514587 - 4514302
Alignment:
Q  9 agcaaaggggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||  ||||||| |||| |||||||||     
T  4514587 agcaaatgggccaatggtgtatagagaagggagcatagaataaagagcattcataacatcactctcaagatcattagaagtatttaaaaaaatagcagaa 4514488  T
Q  109 gctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaat 208  Q
    ||||| |||| ||||||||| | ||||| || |||||||| || | ||||||||| || |||||||| |||  ||  | ||| |||||||||||| || |    
T  4514487 gctctatgaagtctatctaccatttcaaagataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagt 4514388  T
Q  209 ttcgcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagt 294  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| | |||||||    
T  4514387 ttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataattgcaaaagt 4514302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 4506530 - 4506808
Alignment:
Q  16 gggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgt 115  Q
    |||||||| |||||||||||||| ||||||  ||  ||| |||||| ||||| ||||||||| |||||  ||||||||| |||||||| ||||||||| |    
T  4506530 gggccaatagtgtatagagaaggaaacataatatcaagagcattcagaacattactctcaagttcattagaagtattgagaacaatagaagaggctctat 4506629  T
Q  116 gaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaa 215  Q
    ||||| | ||| || ||||||| | ||||||||||  | |||| ||||||| ||||||||||||  ||  | |||  || |||||||| || |||| |||    
T  4506630 gaaatgtttctgctgcttcaataataaattctatcctcaaatcgttaggatctgttgtccttataaaatcaggaagatctttcagtctaaagtttctcaa 4506729  T
Q  216 acctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagt 294  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  4506730 acctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatcataattacaaaagt 4506808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 3172417 - 3172682
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||| ||||||||||||||||| ||||||   |||  ||||||||||||||||||||| |||||  |||| ||||||||||||||||| ||| |||||     
T  3172417 ccaattgtgtatagagaagggaatatagaactaagagtattcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtgac 3172516  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || ||||| |||||||||| | ||||||||||| | |||||||||||| | || |||| ||  ||||| |||  | ||||| ||| || |||  ||||||    
T  3172517 atttatctcctacttcaatcataaattctatcatcaaatcattaggatcttttatcctaattaaagtaggaagatgcttcaatctaaagtttttcaaacc 3172616  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataa 284  Q
    ||||||||| |||||| |||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  3172617 tggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatcataa 3172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 4266632 - 4266358
Alignment:
Q  9 agcaaaggggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||   ||||||||| |||||||| ||||    
T  4266632 agcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagag 4266533  T
Q  109 gctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaat 208  Q
    |||| |||| |||||||  | |||||  | | ||||| ||||| | |||||||||||| |||  ||||| |  ||  | ||| ||||||||  || || |    
T  4266532 gctcggtgacatctatccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagt 4266433  T
Q  209 ttcgcaaacctggaatcca---atcaactttagtctccaaatatccatttgttagataactctcatctgcatatc 280  Q
    || |||||||| |||||||   | |||||||| | || |||||||||||||||||||||||||||||||||||||    
T  4266432 tttgcaaaccttgaatccagtcaccaactttattatctaaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 4561180 - 4561464
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||  |||||||||| || ||| |||| |||||  ||     
T  4561180 ccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctaagac 4561279  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || ||||| | |||||| ||  ||||  ||||  | | |||||||||||| ||||| ||||  |  || |||  ||||||| |||||| |||  ||||||    
T  4561280 atttatctgccacttcagtgttaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacc 4561379  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagctt 303  Q
    ||| ||||| |||||||| || |||| |||| |||||||||||| |||||||||||||| |||||| | ||||| ||| ||||||    
T  4561380 tgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcatgtcataattgcaaaaatcaatagctt 4561464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 4626627 - 4626913
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    |||||||| |||| |||| ||||| ||||||||||  ||||||| ||||||| |||||| |||| | |||| |||||||||||||| || ||||||||||    
T  4626627 ccaatggtatatacagaaaggaacgtagaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaa 4626726  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttc-gcaaac 217  Q
    |||||||| |  |||||||||||||||||| ||    ||||||||||||||||||||||||  |  |||||| ||||||||| | |||| ||| |||| |    
T  4626727 atctatctgccgcttcaatgagaaattctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcag-ccgaaagttctgcaatc 4626825  T
Q  218 ctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttga 305  Q
    | ||||| ||||| | ||| || || |||||||||||||| | |||| |||||||||| | |||||| | || |||||| || |||||    
T  4626826 cgggaatacaatctagtttggtgtctaaatatccatttgtcaaataagtctcatctgcttttcataattacacaagtcaatatcttga 4626913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 4574984 - 4575266
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||  |||||||||| || ||| |||| ||||| |||     
T  4574984 ccaattgtgtatagagaagggaacatagaatagaaagcattcataacatcactctcaagttcattagaagtattgaataccataccagaagctctatgac 4575083  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || ||||| | |||||| |   ||||  ||||  | | |||||||||||| ||||| ||||  |  || |||  ||||||| |||||| |||  ||||||    
T  4575084 atttatctgccacttcagtattaaatcttatcgtcaagtcattaggattttttgtctttattaacctaggaagatccttcaatctgaagtttttcaaacc 4575183  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagc 301  Q
    ||| ||||| |||| ||| || ||||||||| |||||||||||| |||||||||||||| |||||| | ||||| ||| ||||    
T  4575184 tgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcatgtcataattgcaaaaatcaatagc 4575266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 4458261 - 4458534
Alignment:
Q  9 agcaaaggggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||| ||||   ||||||||| |||||||| ||||    
T  4458261 agcaaatgggccaatggtgtatatagaagggaacatagagtagagagtattcataacatcactctcaagttcataagaagtattgataacaatagaagag 4458360  T
Q  109 gctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaat 208  Q
    ||||| ||| |||||||| | |||||  | | ||||| ||||| | ||| |||||||| |||  || ||||  ||  | ||| ||||||||  || || |    
T  4458361 gctctatgacatctatctgccacttcggttataaattttatcatcaaattattaggatctgtaatctttataaaatcaggaaggtccttcaacctaaagt 4458460  T
Q  209 ttcgcaaacctggaatccaatca---actttagtctccaaatatccatttgttagataactctcatctgcatat 279  Q
    || ||||||||| |||||| |||   |||||  | ||||||||||||||||||| ||||||||| |||||||||    
T  4458461 tttgcaaacctgaaatccagtcaccgacttttttgtccaaatatccatttgttaaataactctcttctgcatat 4458534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 4461799 - 4462094
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||||||||||||||||||||| ||| |||||||  ||||||||| |||||| || || |||||  ||||||| |||| || |||||| |||||||||     
T  4461799 ccaatggtgtatagagaagggaatataaaatagagttcattcataatatcactttcgagttcattagaagtattcaaaataacagcagaagctctgtgac 4461898  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || |||||   | |||| ||| ||||| ||||| | | | |||||||| | || || ||||      | |||| ||||||| ||||||||||  ||||||    
T  4461899 atttatctgtcatttcactgacaaattttatcagcaagttattaggatcttttatctttattgtttcaggaaaatccttcaatctgaaatttttcaaacc 4461998  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttgacgctatata 314  Q
    ||||||||| ||||||| ||| || |||||||||| |||||||||| ||||||||||||||||||| |  |||||||| |||||||| | ||||||    
T  4461999 tggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatcataattaaaaaagtcaatagcttgaagttatata 4462094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 4602477 - 4602733
Alignment:
Q  28 tatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatcta 127  Q
    |||| |||||||||||||||||| ||  ||||||| |||||||||||||| |||||| ||||||| |||| ||||| |||| |||| | ||||||||||     
T  4602477 tataaagaagggaacatagaatatagtgcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctg 4602576  T
Q  128 ctacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacctggaatcca 227  Q
    | | |||||  |  ||||||| ||    |||||| |||| ||||||||| ||  |   ||||| ||||||||  |  || |||  |||||||||||||||    
T  4602577 caatttcaaaaaagaattctaccataatatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatcca 4602676  T
Q  228 atcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataa 284  Q
    ||| ||||| || |||||| ||||||||||||||||||| |||||||||||||||||    
T  4602677 atctacttttgtttccaaacatccatttgttagataactatcatctgcatatcataa 4602733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 4470479 - 4470762
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||||| ||||||||||||||| |||||||||||  |||||||||||||||| ||||| |||||  ||||||| |||||||||||||| ||||| |||     
T  4470479 ccaatggcgtatagagaagggaatatagaatagagttcattcataacatcactttcaagttcattagaagtattcaaaacaatagcagaagctctttgac 4470578  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || ||| |   |||||| |   | ||| || ||   | |||||||||| | || || ||||      | |||| ||||||| |||||| |||  ||||||    
T  4470579 atttatttgtcacttcatttgtatattttaacataaagtcattaggatcttttatctttattgtttcaggaaaatccttcaatctgaagtttttcaaacc 4470678  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagct 302  Q
    ||||||||| ||||||| | | || |||||||||| | |||||||||||||||||||||||||||| |  |||||||| |||||    
T  4470679 tggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatcataattgaaaaagtcaatagct 4470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 4299277 - 4299148
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||| || |||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||   ||||||| |||||||||||||| ||| ||||||    
T  4299277 ccaatagtatataaagaagggaacatagaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaa 4299178  T
Q  119 atctatctactacttcaatgagaaattcta 148  Q
    |||||||| |  ||||||||  ||||||||    
T  4299177 atctatctgccgcttcaatggcaaattcta 4299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 4481369 - 4481665
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||   ||||||||| ||||| |||||| ||||| |||     
T  4481369 ccaatggtgtatagagaagggaatatagaatagagagaattcataacatcactctcaagttcataagaagtattgataacaaaagcagatgctctttgac 4481468  T
Q  119 atctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaatttcgcaaacc 218  Q
    || |||||   |||||| |   | ||| ||| | | | | |||||||| ||||  | | ||  ||  | ||| |||||||| ||| || |||  ||||||    
T  4481469 atttatctgtcacttcatttttatattttatgatcaagtgattaggatctgttaccttaattaaatcaggaaggtccttcaatctaaagtttttcaaacc 4481568  T
Q  219 tggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttgacgctatatat 315  Q
    ||||||||| || ||| | |  ||||||||||||| ||||| ||||||||||||||||||||| ||   ||||| ||| |||||||| | |||||||    
T  4481569 tggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatcacaatcacaaaattcaatagcttgaagttatatat 4481665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 4517170 - 4517262
Alignment:
Q  192 gtccttcagtctgaaatttcgcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataa 284  Q
    |||||| ||||| || |||| ||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||    
T  4517170 gtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatcataa 4517262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 4593104 - 4593172
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatca 281  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4593104 caaacctggaatccaatctactttagtttccaaatatccatttgttagataactctcatctgcatatca 4593172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 4489623 - 4489520
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttgacgctata 312  Q
    ||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||||||| || | ||||||||| |||||||| | ||||    
T  4489623 caaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatcacaatttcaaaagtcaatagcttgaagttata 4489524  T
Q  313 tata 316  Q
    ||||    
T  4489523 tata 4489520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 213 - 284
Target Start/End: Original strand, 4617895 - 4617966
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataa 284  Q
    |||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  4617895 caaaccgggaatccaatctactttagtttccaaacatccatttgttagataactctcatctgcatatcataa 4617966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 4564584 - 4564652
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatca 281  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||| |||| ||||||||||||    
T  4564584 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctgatctgcatatca 4564652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 4568901 - 4568975
Alignment:
Q  208 tttcgcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataa 284  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||| ||||||  ||||||||||||| ||||    
T  4568901 tttcgcaaacctggaatccagtcaactttagtgaccaaatatccatttgtcagataa--ctcatctgcatattataa 4568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 4592907 - 4592999
Alignment:
Q  16 gggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    |||||||||| ||| |||||||| ||||||||  ||||| |||| || |||||||||||||| |||||||||||||| |||| ||||| ||||    
T  4592907 gggccaatggggtaaagagaaggaaacatagaggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagag 4592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 4622834 - 4622945
Alignment:
Q  37 gggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaa 136  Q
    |||||||| ||||||||  |||||||  ||||| ||||||| |||||  ||||||| |||| ||||||||||| | |||||||||  ||| |  ||||||    
T  4622834 gggaacattgaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaa 4622933  T
Q  137 tgagaaattcta 148  Q
    ||||||||||||    
T  4622934 tgagaaattcta 4622945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 4259601 - 4259547
Alignment:
Q  28 tatagagaagggaacatagaatagagaacattcataacatcactctcaagctcat 82  Q
    |||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  4259601 tataaagaagggaacatagaatagagcacattcattacatcactctcaagttcat 4259547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 4557994 - 4558055
Alignment:
Q  212 gcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatct 273  Q
    |||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||    
T  4557994 gcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatct 4558055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 4571861 - 4571910
Alignment:
Q  232 actttagtctccaaatatccatttgttagataactctcatctgcatatca 281  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  4571861 actttagtgtccaaatatccgtttgtcagataactctcatctgcatatca 4571910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 315
Target Start/End: Complemental strand, 4503721 - 4503629
Alignment:
Q  223 atccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttgacgctatatat 315  Q
    ||||| ||||||||| | ||||||| ||||| |||||||||||||||||||| ||| || || | ||||| ||| |||||||| | |||||||    
T  4503721 atccagtcaactttactgtccaaatttccatctgttagataactctcatctgtataacacaattgcaaaactcaatagcttgaagatatatat 4503629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 4484232 - 4484150
Alignment:
Q  28 tatagagaagggaacatagaat--agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    ||||||||||| ||||||| ||  |||| | |||||||||||||||||| || ||||| ||||||||||||||| ||| ||||    
T  4484232 tatagagaaggaaacatagtatcaagagcatattcataacatcactctctagttcattaaaagtattgaaaacattagaagag 4484150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 4503804 - 4503725
Alignment:
Q  56 cattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttca 135  Q
    |||||||| ||||||||||||| |||||  |||||||||||||||| || |||||||| ||| || ||||| | ||||||    
T  4503804 cattcatagcatcactctcaagttcattagaagtattgaaaacaatggctgaggctctttgacatttatctgccacttca 4503725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 4586510 - 4586572
Alignment:
Q  217 cctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatat 279  Q
    |||||||| || || |||||||| ||||||||||| ||||| |||||||||| ||||||||||    
T  4586510 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 4489814 - 4489733
Alignment:
Q  16 gggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaa 97  Q
    |||||||| ||||||| ||||||||| ||||||   ||| |||| ||| ||||||||||||| |||||  ||||||||||||    
T  4489814 gggccaattgtgtatacagaagggaatatagaactaagagcattgatagcatcactctcaagttcattagaagtattgaaaa 4489733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 4580915 - 4580972
Alignment:
Q  217 cctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctg 274  Q
    |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| |||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctg 4580972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 4612961 - 4612916
Alignment:
Q  232 actttagtctccaaatatccatttgttagataactctcatctgcat 277  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||    
T  4612961 actttagtatccaaatatccgtttgtcagataactctcatctgcat 4612916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 4256049 - 4255977
Alignment:
Q  47 aatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaa 119  Q
    |||||||| ||||||  ||||| |||||||| |||||  |||| || |||||||||||||||||||| |||||    
T  4256049 aatagagagcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggctctatgaaa 4255977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 4259397 - 4259325
Alignment:
Q  232 actttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagcttg 304  Q
    ||||| || |||| |||||||||||||||||| |||| |||||| | |||||| | ||||||||| |||||||    
T  4259397 actttggtatccagatatccatttgttagatagctcttatctgcttgtcataattacaaaagtcaatagcttg 4259325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 4484102 - 4484020
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttg-ttagataactctcatctgcatatcataactccaaaagt 294  Q
    |||| |||||| ||| || |||| ||| ||||||||| |||||| |||||||||||| || |||||||||||| | |||||||    
T  4484102 caaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatcataattacaaaagt 4484020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 4571665 - 4571795
Alignment:
Q  36 agggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttca 135  Q
    ||||||| | ||| ||| ||| ||||| |||||  ||||||| |||||  ||||||| |||| || ||||||||||||||||   ||  || || |||||    
T  4571665 agggaacgtcgaagagataactttcattacatccttctcaagttcattagaagtattaaaaataaaagcagaggctctgtgagcccttcctgctgcttca 4571764  T
Q  136 atgagaaattctatcaacgaatcattaggat 166  Q
    |||| |||||||| || ||||||||| ||||    
T  4571765 atgataaattctaccatcgaatcatttggat 4571795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 4617732 - 4617785
Alignment:
Q  50 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatag 103  Q
    ||||| |||| || |||||||||||||| |||||||||||||| |||| |||||    
T  4617732 agagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatag 4617785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 4568765 - 4568805
Alignment:
Q  64 acatcactctcaagctcattgaaagtattgaaaacaatagc 104  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  4568765 acatcactctcaagttcattataagtattgaaaacaatagc 4568805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 24103665 - 24103938
Alignment:
Q  9 agcaaaggggccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagag 108  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||||   ||||||||| |||||||| ||||    
T  24103665 agcaaatgggccaatggtgtatatagaagggaacatagagtagagagcattcataacatcactctcaagttcatatgaagtattgataacaatagaagag 24103764  T
Q  109 gctctgtgaaatctatctactacttcaatgagaaattctatcaacgaatcattaggatttgttgtccttatgcaagtaagaaagtccttcagtctgaaat 208  Q
    ||||||||| ||||  |  | |||||  | | ||||| ||||| | |||||||||||| |||  ||||| |  ||  | ||| ||||||||  || || |    
T  24103765 gctctgtgacatcttaccgccacttcggtaataaattttatcatcaaatcattaggatctgtaatccttgtaaaatcaggaaggtccttcaacctaaagt 24103864  T
Q  209 ttcgcaaacctggaatc---caatcaactttagtctccaaatatccatttgttagataactctcatctgcatat 279  Q
    |  ||||||||||||||   | | |||||||| | || ||||||||||||||||||||||||||||||||||||    
T  24103865 tatgcaaacctggaatcctgccaccaactttattgtctaaatatccatttgttagataactctcatctgcatat 24103938  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 1281978 - 1282078
Alignment:
Q  204 gaaatttcgcaaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcataactccaaaagtcagtagctt 303  Q
    |||||||  |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||| | ||||||| | ||||||    
T  1281978 gaaatttttcaaacctggaatccaatctacttttgtttccaaatatccatttgttagataactctcatctgca-atcataagtacaaaagttaatagctt 1282076  T
Q  304 ga 305  Q
    ||    
T  1282077 ga 1282078  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 1281824 - 1281900
Alignment:
Q  50 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatct 126  Q
    ||||| |||| || |||||||||||||| |||||||||||||| |||| ||||| |||| |||| | || |||||||    
T  1281824 agagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatct 1281900  T

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Target: scaffold0477 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 4145 - 4038
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    |||||||| |||| |||||||||||||||||||||| ||||||  ||| | |||||||| |||| | |||| |||||||||||||  |||||| |||| |    
T  4145 ccaatggtatataaagaagggaacatagaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaatagtcgaggctttgtgga 4046  T
Q  119 atctatct 126  Q
    ||||||||    
T  4045 atctatct 4038  T

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Target: scaffold0199 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 337 - 406
Alignment:
Q  213 caaacctggaatccaatcaactttagtctccaaatatccatttgttagataactctcatctgcatatcat 282  Q
    ||||||||||||||| || ||||| || ||||||||||||||||||||||  ||||||||||||||||||    
T  337 caaacctggaatccactcgacttttgtttccaaatatccatttgttagatgtctctcatctgcatatcat 406  T

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Target: scaffold0199; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 188 - 242
Alignment:
Q  64 acatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    |||||||||||||| |||||||||||||| |||| ||| | |||| |||||||||    
T  188 acatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaa 242  T

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Target: scaffold0288 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 3156 - 3045
Alignment:
Q  37 gggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaa 136  Q
    ||||||||||| | |||  ||||||  |||||||||||||| |||||  |||| || |||||||| ||||| ||||||||||||  |||| || ||||||    
T  3156 gggaacatagagtggagcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtgaaattgatctgctgcttcaa 3057  T
Q  137 tgagaaattcta 148  Q
    ||| ||||||||    
T  3056 tgaaaaattcta 3045  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 3087096 - 3087225
Alignment:
Q  19 ccaatggtgtatagagaagggaacatagaatagagaacattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaa 118  Q
    |||||||| ||||  |||||||||| |||||| ||  ||||||| |||||||||||||| ||||   |||| || || | ||||||||||||| |||| |    
T  3087096 ccaatggtatataatgaagggaacacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgta 3087195  T
Q  119 atctatctactacttcaatgagaaattcta 148  Q
    | |||||  | |||||||||| ||||||||    
T  3087196 agctatcccccacttcaatgacaaattcta 3087225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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