View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_14 (Length: 426)
Name: NF14282_low_14
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 94 - 408
Target Start/End: Complemental strand, 43344588 - 43344275
Alignment:
| Q |
94 |
atccataagaaatggactctttaaat-gtctctccacttgttggttggggggtcacgtgctatatatatgttatgcctataactcttaagtgcaacaaat |
192 |
Q |
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| T |
43344588 |
atccataagaaatggactcttaaaattgtctctccacttgttggttggggggtcacgtgctatatatatgttatgcctataactct-aagtgcaacaagt |
43344490 |
T |
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| Q |
193 |
gtttttggagaaacaaatggctcttaaaaaatggtcacatgaacaaattataggagctttatcttctcccttttgtctatctcttttgttccttgtaagt |
292 |
Q |
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| T |
43344489 |
atttttggagaaacaa-tggctcttaaaaaatggtcacatgaacaaattataggagctttatcttctcccttttgtctatctcttttgttccttgtaagt |
43344391 |
T |
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| Q |
293 |
gtgttgtttgtttttaagtttgccattggaaaatccaaatccaaaaccaatccaaaacaacttccatctccaccgaaactaccgatcatcggtaatcttc |
392 |
Q |
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| T |
43344390 |
gtgttgtttgtttttaagtttgccattggaaaatctaaatccaaaaccaatccaaatcaacttccatctccaccgaaactaccgatcatcggtaatcttc |
43344291 |
T |
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| Q |
393 |
atcagctaggcacact |
408 |
Q |
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| T |
43344290 |
atcagctaggcacact |
43344275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 191 - 408
Target Start/End: Complemental strand, 43361405 - 43361195
Alignment:
| Q |
191 |
atgtttttggagaaacaaatggctcttaaaaaatggtcacatgaacaaattataggagctttatcttctcccttttgtctatctcttttgttccttgtaa |
290 |
Q |
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|||| |||||| |||||| ||| ||| |||| |||||||||||||||||||| ||||||| | ||||| ||||||| |||||||||||| ||||| |||| |
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| T |
43361405 |
atgtgtttggacaaacaa-tggttctcaaaatatggtcacatgaacaaattaaaggagctctttcttcacccttttctctatctcttttcttcctagtaa |
43361307 |
T |
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| Q |
291 |
gtgtgttgtttgtttttaagtttgccattggaaaatccaaatccaaaaccaatccaaaacaacttccatctccaccgaaactaccgatcatcggtaatct |
390 |
Q |
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| T |
43361306 |
gtgtgctgattgtgtttaagtttgcaattagaaaatc------caaaaccaatataaatcagcctccgtctccaccgaaacttccgatcatcggtaatct |
43361213 |
T |
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| Q |
391 |
tcatcagctaggcacact |
408 |
Q |
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|||||||||||||||||| |
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| T |
43361212 |
tcatcagctaggcacact |
43361195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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