View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_15 (Length: 415)
Name: NF14282_low_15
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 32629506 - 32629864
Alignment:
| Q |
14 |
agacaactaaaatgtggcttaaactttctgaacgtgtgtccccacacttaggacatctgccataatccaaatgttaagtcaatagtcaatactaaattac |
113 |
Q |
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| T |
32629506 |
agacaactaaaatgtggcttaaactttctgaacgtgtgtccccacacttaggacatctgccataatccaactgttaagtcaatagtcaatactaaattac |
32629605 |
T |
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| Q |
114 |
ttctctaatgtgaatattggatcagttaaataaatcatcgtgcgacgtgctttttattttatcattttaacataaaatataagatattcatttcacatct |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32629606 |
ttctctaatgtgcatattggatcagttaaataaatcatcgtgcgacgtgctttttattttatcattttaacataaaatataagatattcatttcacatct |
32629705 |
T |
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| Q |
214 |
tgccatgttgacctaatg-nnnnnnntgttgacctaatgaagtttcttgagttttgcttgagttgaggtatatatttctacaaccggtatttctcctttc |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32629706 |
tgccatgttgacctaatgaaaaaaaatgttgacctaatgaagtttcttgagttttgcttgagttgaggtatatatttctacaaccggtatttctcgtttc |
32629805 |
T |
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| Q |
313 |
tcagttcatcatagatagatagaacaaaatgagaaacatttcaaaagcatcatgcttca |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |
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| T |
32629806 |
tcagttcatcatagatagatagaacaaaatgagaaacattacaaaaatagcatgcttca |
32629864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 32611574 - 32611657
Alignment:
| Q |
288 |
ttctacaaccggtatttctcctttctcagttcatcatagatagatagaacaaaatgagaaacatttcaaaagcatcatgcttca |
371 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||| |
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| T |
32611574 |
ttctacaaccactgtttctcctttctcagttcatcatagatagataaaacaaaatgagaaacattacaaaaatagcatgcttca |
32611657 |
T |
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