View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_low_18 (Length: 376)

Name: NF14282_low_18
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_low_18
NF14282_low_18
[»] chr5 (2 HSPs)
chr5 (2-374)||(30469525-30469897)
chr5 (65-243)||(39346006-39346182)
[»] chr7 (1 HSPs)
chr7 (65-243)||(35347458-35347634)
[»] chr6 (1 HSPs)
chr6 (65-243)||(2274516-2274692)
[»] chr1 (2 HSPs)
chr1 (65-243)||(4011850-4012026)
chr1 (65-243)||(25875536-25875713)
[»] chr2 (1 HSPs)
chr2 (65-243)||(10790373-10790549)


Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 2 - 374
Target Start/End: Original strand, 30469525 - 30469897
Alignment:
Q  2 cttcaacattgtttctgagtatgatgttaccagtgaatttttggtatgttccttaccaattcacattttttattgttacttttattggacaaaattactt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469525 cttcaacattgtttctgagtatgatgttaccagtgaatttttggtatgttccttaccaattcacattttttattgttacttttattggacaaaattactt 30469624  T
Q  102 cttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcattggataagaggaccatggccatggtggtcatagcacaa 201  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30469625 cttgcgtctattcttccctgattcatagaagttgttctacaatggtttttgtgaatttgcattggataagaggaccacggccatggtggtcatagcacaa 30469724  T
Q  202 ttgcgacaacaagtggaattgcactcttatttttggatctatgtcatacaatcataattggtggtggtgagtggaagagcatgattgagtgcagaatttt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469725 ttgcgacaacaagtggaattgcactcttatttttggatctatgtcatacaatcataattggtggtggtgagtggaagagcatgattgagtgcagaatttt 30469824  T
Q  302 tgaaggtgtacgtttcaagctgggtgatcagatggtcggcaaaagtgaaattgtttaccttcatctctctcga 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30469825 tgaaggtgtacgtttcaagctgggtgatcagatggtcggcaaaagtgaaattgtttaccttcatgtctatcga 30469897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 39346006 - 39346182
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | |||||||| | ||||| |||||| ||   ||||||||| | ||||| |||||||||| |||||||||||||||| |||| |||| |    
T  39346006 cattttttattataacttttatag-acaaacttacttattatttctattttttcttgattgatagaagttggtctacaatggtttttgtgaatctgcact 39346104  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| || |||| | |||||||||||| ||||||||| |||| ||||||||    
T  39346105 ggataaaaggaccacggctttggttttgatag-acgattgtggcaacaagtggaactgcactctttttttaggatctat 39346182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 35347458 - 35347634
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | |||||||| | ||||| |||||| ||   ||||||||| | ||||| |||||||||| |||||||||||||||| |||| |||| |    
T  35347458 cattttttattataacttttatag-acaaacttacttattatttctattttttcttgattgatagaagttggtctacaatggtttttgtgaatctgcact 35347556  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| || |||| | |||||||||||| ||||||||| |||| ||||||||    
T  35347557 ggataaaaggaccacggctttggttttgatag-acgattgtggcaacaagtggaactgcactctttttttaggatctat 35347634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 2274516 - 2274692
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | |||||||| | ||||| |||||| ||   ||||||||| | ||||| |||||||||| |||||||||||||||| |||| |||| |    
T  2274516 cattttttattataacttttatag-acaaacttacttattatttctattttttcttgattgatagaagttggtctacaatggtttttgtgaatctgcact 2274614  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| || |||| | |||||||||||| ||||||||| |||| ||||||||    
T  2274615 ggataaaaggaccacggctttggttttgatag-acgattgtggcaacaagtggaactgcactctttttttaggatctat 2274692  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 4011850 - 4012026
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | |||||||| | ||||| |||||| ||   ||||||||| | ||||| |||||||||| |||||||||||||||| |||| |||| |    
T  4011850 cattttttattataacttttatag-acaaacttacttattatttctattttttcttgattgatagaagttggtctacaatggtttttgtgaatctgcact 4011948  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| || |||| | |||||||||||| ||||||||| |||| ||||||||    
T  4011949 ggataaaaggaccacggctttggttttgatag-acgattgtggcaacaagtggaactgcactctttttttaggatctat 4012026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 243
Target Start/End: Original strand, 25875536 - 25875713
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | ||||||  | |||||| |||||| ||  |||||||| | | | ||| |||||||||| |||||||||||||||| ||||||||| |    
T  25875536 cattttttattataactttttatagacaaacttacttattatgtctatttcttctttattgatagaagttggtctacaatggtttttgtgaatttgcact 25875635  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| |  |||| || ||||||||||| ||||||||| |||| ||||||||    
T  25875636 ggataaaaggaccacggctttggttttgatag-atgattgtgataacaagtggaagtgcactctttttttaggatctat 25875713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 10790549 - 10790373
Alignment:
Q  65 cattttttattgttacttttattggacaaaattacttcttgcgtctatttttccctgattcatagaagttgttctacaatggtttttgcgaatttgcatt 164  Q
    ||||||||||| | ||||||||   ||||| |||||| ||  |||||||||| | | ||| |||||||||| |||||||||||||||| |||| |||| |    
T  10790549 cattttttattataacttttatat-acaaacttacttattatgtctattttttctttattgatagaagttggtctacaatggtttttgtgaatctgcact 10790451  T
Q  165 ggataagaggaccatggccatggtggtcatagcacaattgcgacaacaagtggaattgcactcttatttttggatctat 243  Q
    |||||| ||||||| |||  ||||  | |||| |  |||| |  ||||||||||| ||||||||| |||| ||||||||    
T  10790450 ggataaaaggaccacggctttggttttgatag-atgattgtggtaacaagtggaactgcactctttttttaggatctat 10790373  T

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