View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_2 (Length: 587)
Name: NF14282_low_2
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 38822524 - 38821940
Alignment:
| Q |
1 |
gttaacataataacttagccttttatactgtgctacaaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaatgat |
100 |
Q |
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| T |
38822524 |
gttaacataataacttagccttttatactgtgctacaaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaatgat |
38822425 |
T |
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| Q |
101 |
tgagattggtaatagaattcaatgtatgttgatcacatactctgctgaatgctataagccaaggattaattttttgtttggattattattatt---cata |
197 |
Q |
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| T |
38822424 |
tgagattggtaatagaattcaatgtatgttgatcacatactctgctcaatgctataagccaaggattaattttt-gtttggattattattattattcata |
38822326 |
T |
|
| Q |
198 |
aagaaaatcacctagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattat |
297 |
Q |
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| T |
38822325 |
aagaaaatcacctagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcatccagaggttatttggatatagaaaaaagaattat |
38822226 |
T |
|
| Q |
298 |
ttgtcctaccagtgccacttgtttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataat |
397 |
Q |
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| T |
38822225 |
ttgtcctaccagtgccacttgtttgtctaaactgatggtccgtttagtcaagtactaacgataagattattaattgattaaaggaccaagacattataat |
38822126 |
T |
|
| Q |
398 |
acaatctta---ttatatgaaattcatcacatggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacg |
494 |
Q |
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| T |
38822125 |
acaatcttattattatatgaaattcatcacgtggttgatagtatcttcaggtaggaaggtgaaacattgaacttcaacagtttatccatattgtcttacg |
38822026 |
T |
|
| Q |
495 |
tcatggttcttagatactgaaatagaactttggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattcttc |
580 |
Q |
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| T |
38822025 |
tcatggttcttagatactgaaatagaactttggtggctttttaaattttgcaatctttgttattgatgtcaattggaatattcttc |
38821940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 38809363 - 38809270
Alignment:
| Q |
171 |
tttttgtttggattattattattcataaagaaaatcacc-tagttggtatatatttctaacgacacagactatgaggtcagaaggatcatgcat |
263 |
Q |
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| T |
38809363 |
tttttgtttggattattattattcataaagaaaatcaccctagttggtatatagttctaacgagacagattatgaggtcagaaggatcatgcat |
38809270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 38811630 - 38811544
Alignment:
| Q |
10 |
ataacttagccttttatactgtgctacaaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaa |
96 |
Q |
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| T |
38811630 |
ataacttagctttttatattgagctacaaaaaatgcatttatttggaaatttattcaatgttcaatggattggtaaaaattatcaaa |
38811544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 38809551 - 38809473
Alignment:
| Q |
18 |
gccttttatactgtgctacaaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaa |
96 |
Q |
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| T |
38809551 |
gccttttatattgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggatttgtaaaaattaccaaa |
38809473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 38811491 - 38811454
Alignment:
| Q |
178 |
ttggattattattattcataaagaaaatcacctagttg |
215 |
Q |
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| T |
38811491 |
ttggattattattattcataaagaaaatcacctagttg |
38811454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 38809213 - 38809150
Alignment:
| Q |
273 |
atttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtc |
337 |
Q |
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| T |
38809213 |
atttggatatagaaaaat-aaccatttgtcctaccggtgccacttgtttgtctaaactaatggtc |
38809150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 526 - 578
Target Start/End: Original strand, 35521716 - 35521768
Alignment:
| Q |
526 |
ggtggcttttttaattttgaaatctttgttattgatgtcaattggaatattct |
578 |
Q |
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| T |
35521716 |
ggtgtcttttttgattttgaaatatttgctatcaatgtcaattggaatattct |
35521768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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