View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_23 (Length: 324)
Name: NF14282_low_23
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 4834757 - 4834453
Alignment:
| Q |
1 |
ccttgatattctatttgcgtagttggatgagattgattaaagtttgtaaggtaattgtgttaattaagcctaataacaaatgtaatggtgtgaattaaag |
100 |
Q |
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| T |
4834757 |
ccttgatattctatttgcgtagttggatgagattaattaaagtttgtaaggtaattgtgttaattaagcctaataacaaatgtaatggtgtgaattaaag |
4834658 |
T |
|
| Q |
101 |
ctcgctgggaaggtgagaggtggttttgggagcaagagcacctggctaacatgannnnnnnnnnnnnnnnnnnnnnnaccatttgatagtgttatcctat |
200 |
Q |
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| T |
4834657 |
ctcactgggaaggt--gaggtggttttgggagcaagaacacctagctaacatgatttttttttttttttttttttttaccatttggtagtgttatcttat |
4834560 |
T |
|
| Q |
201 |
cttgctagcggatatttggtcttgttggaacgactcttctttagttggatttatgttagttcaacatatgaatttcttgcagttagattgccttcgatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4834559 |
cttgctagcggatatttggtcttgttggaacgactcttctttagttggatttatgttagttcaacatatgaatttcttgcagttagattgccttcgatgg |
4834460 |
T |
|
| Q |
301 |
agtcttt |
307 |
Q |
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||||||| |
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| T |
4834459 |
agtcttt |
4834453 |
T |
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