View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_low_24 (Length: 320)

Name: NF14282_low_24
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_low_24
NF14282_low_24
[»] chr4 (4 HSPs)
chr4 (1-299)||(21820480-21820775)
chr4 (15-274)||(12189918-12190177)
chr4 (22-152)||(8910274-8910404)
chr4 (19-89)||(5716617-5716687)
[»] chr3 (2 HSPs)
chr3 (24-291)||(13292956-13293223)
chr3 (24-291)||(13361984-13362255)
[»] chr1 (2 HSPs)
chr1 (13-242)||(27518535-27518764)
chr1 (84-252)||(22625721-22625888)
[»] chr7 (5 HSPs)
chr7 (22-147)||(20051981-20052106)
chr7 (22-261)||(5760765-5761004)
chr7 (18-151)||(4447882-4448015)
chr7 (91-149)||(18085795-18085853)
chr7 (88-145)||(8969531-8969587)
[»] chr5 (1 HSPs)
chr5 (49-254)||(31217283-31217488)
[»] chr6 (3 HSPs)
chr6 (22-229)||(23602128-23602335)
chr6 (31-224)||(10480776-10480969)
chr6 (82-226)||(19217562-19217706)
[»] chr8 (2 HSPs)
chr8 (28-151)||(17931805-17931928)
chr8 (22-149)||(24278435-24278562)
[»] scaffold0412 (1 HSPs)
scaffold0412 (22-149)||(841-967)
[»] chr2 (1 HSPs)
chr2 (197-254)||(25917552-25917609)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 21820480 - 21820775
Alignment:
Q  1 gcctttttcgagtcatcgtgttctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21820480 gcctttttcgagtcatcgtgttctacctatgaaggaaatcaacaggtaaaagaggttaatgccaaccagttggttcaccaatatgagcttttcaaaatga 21820579  T
Q  101 aggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  21820580 aggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacagtacctgattatatc-- 21820677  T
Q  201 gaagattcttaggagtcttcctgccaagttcaaaccaaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaag 299  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21820678 -aagattcttaggagtcttcctgccaagttcaaaccaaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaatatgctaag 21820775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 12190177 - 12189918
Alignment:
Q  15 atcgtgttctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagat 114  Q
    |||||||||||| ||||||| ||| ||||| |  ||  | | ||| || ||||| |||||||| |||||||| ||||| ||||||| |||  || |||||    
T  12190177 atcgtgttctacatatgaagtaaaccaacaagggaagcaagataatgctaaccaattggttcatcaatatgatctttttaaaatgagggaggatgaagat 12190078  T
Q  115 attgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttagga 214  Q
    |||||||||||| ||||||||||||| ||||||||||  | |||||| |||  || |||||  ||||| || |||||  || |||| ||||||||| |||    
T  12190077 attgaaaccatgtattcaaggtttcagactcttgtatttgtccttcaggttcagaataaaatttatactattcctgaccatgtcaaaaagattcttcgga 12189978  T
Q  215 gtcttcctgccaagttcaaaccaaaggtaacaaccattcaagaagcatgggacttgaaca 274  Q
     ||||||||| | ||||| | ||||||| ||||||||||| ||||||  ||| |||||||    
T  12189977 atcttcctgctaggttcagatcaaaggttacaaccattcaggaagcaaaggatttgaaca 12189918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 8910404 - 8910274
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    ||||| ||||||||||||||||| || |||||||  | ||| || | | | ||||||||||||||||| |||| ||||||| |  || |||||||||||     
T  8910404 tctacttatgaaggaaatcaacaagtcaaagaggccatggcaaatccgcttgttcaccaatatgagctcttcagaatgaagaaggatgaagatattgaag 8910305  T
Q  122 ccatgcattcaaggtttcaaactcttgtatc 152  Q
    |||| |||||||||||| |||||||| ||||    
T  8910304 ccatacattcaaggtttgaaactcttatatc 8910274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5716687 - 5716617
Alignment:
Q  19 tgttctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagct 89  Q
    |||||||||||||||||||| ||||| || ||||||| |||||| |||  ||||||| | || ||||||||    
T  5716687 tgttctacctatgaaggaaaccaacaagttaaagaggctaaggctaacttgttggttaagcagtatgagct 5716617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 291
Target Start/End: Original strand, 13292956 - 13293223
Alignment:
Q  24 tacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaacc 123  Q
    ||||||| | ||||| || || |||||||||| |||||| |||||||| ||||| || ||||||||||| ||||||||| || || |||||||| |||||    
T  13292956 tacctattagggaaaccagcaagtaaaagaggctaaggctaaccagttagttcatcagtatgagctttttaaaatgaagaaagatgaagatattaaaacc 13293055  T
Q  124 atgcattcaaggtttcaaactcttgtatcagaccttcaagttttgag-taaaagatatacaatacctgattatatcaagaagattcttaggagtcttcct 222  Q
    ||| |||||||||||| || | ||||||| | |||| | ||||||||  ||||| ||||   |||||||| || ||||||||||||||||||  | ||||    
T  13293056 atgtattcaaggtttctaatttttgtatctggcctttaggttttgagcaaaaagttataatgtacctgatcatgtcaagaagattcttagga-ccctcct 13293154  T
Q  223 gccaagttcaaaccaaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaat 291  Q
    |||| ||| | ||||||||| |||| |||||| |||||| |||| ||||||||| ||||||||||||||    
T  13293155 gccatgtttagaccaaaggttacaagcattcacgaagcaagggatttgaacacattgagcttggagaat 13293223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 13362255 - 13361984
Alignment:
Q  24 tacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaacc 123  Q
    ||||||||| ||||| ||||| |||||||||| |||||| ||| |||| ||||| || ||||||||||| ||||| ||| || || |||||||| |||||    
T  13362255 tacctatgagggaaaccaacaagtaaaagaggctaaggctaactagttagttcatcagtatgagctttttaaaataaagaaagatgaagatattaaaacc 13362156  T
Q  124 atgcattcaaggtttcaaactcttgtatcagaccttcaagttttgag-taaaagatatacaatacctgattatatcaagaagattcttaggagtcttcct 222  Q
    ||| ||||||| |||| || | ||||||||| |||| | ||||||||  ||||| ||||   |||||||| || ||||||||||||||||||| | ||||    
T  13362155 atgtattcaagctttctaatttttgtatcaggcctttaggttttgagcaaaaagttataatgtacctgatcatgtcaagaagattcttaggag-cctcct 13362057  T
Q  223 gcca----agttcaaaccaaaggtaacaaccattcaagaagcatgggacttgaacacactgagcttggagaat 291  Q
    ||||    | || | |||||| || |||| |||| | |||||| |||| ||||||||| ||||||||||||||    
T  13362056 gccatgttaatttagaccaaatgttacaagcattaacgaagcaagggatttgaacacattgagcttggagaat 13361984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 27518535 - 27518764
Alignment:
Q  13 tcatcgtgttctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaag 112  Q
    |||| ||||||||||||||||||||| || |||||||| || | ||| || |||||  || | || || ||||||||||| |||||||||||  || |||    
T  27518535 tcattgtgttctacctatgaaggaaaccagcaggtaaaggaagctaaagctaaccaactgatgcatcattatgagctttttaaaatgaaggaggatgaag 27518634  T
Q  113 atattgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttag 212  Q
    ||||||||| |||| ||||||||||||||||||||||||| | |||||| ||| ||| |||||||||||   | |||||  || ||||||||| |  |||    
T  27518635 atattgaaatcatgtattcaaggtttcaaactcttgtatctggccttcaggttatgaataaaagatatattgttcctgaccatgtcaagaagaatactag 27518734  T
Q  213 gagtcttcctgccaagttcaaaccaaaggt 242  Q
     ||||||||| ||| ||||| |||||||||    
T  27518735 aagtcttcctaccaggttcagaccaaaggt 27518764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 22625721 - 22625888
Alignment:
Q  84 tgagcttttcaaaatgaaggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatataca 183  Q
    ||||||||| |||| ||||||| || ||||||||||||||||| |||||| |||||| ||||||||||||  |||||| |||  ||| |||| |||||      
T  22625721 tgagctttttaaaacgaaggaagatgaagatattgaaaccatgtattcaaagtttcagactcttgtatcaagccttcaggttcagagaaaaatatataat 22625820  T
Q  184 atacctgattatatcaagaagattcttaggagtcttcctgccaagttcaaaccaaaggtaacaaccatt 252  Q
     | | |||  ||  |||||||||||||||||||||||||||||| |||| |  |||||| |||||||||    
T  22625821 gttcatga-catgccaagaagattcttaggagtcttcctgccaaattcagagtaaaggttacaaccatt 22625888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 20052106 - 20051981
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    |||||||| ||||||||||| |||||||| || | || ||| |||||| ||||| |||| | |||||||||||| ||||| ||  || ||||||||||||    
T  20052106 tctacctacgaaggaaatcagcaggtaaaggaagctatggcaaaccagctggtttaccagtttgagcttttcaagatgaaagaggatcaagatattgaaa 20052007  T
Q  122 ccatgcattcaaggtttcaaactctt 147  Q
    ||||| ||||||||||||||||||||    
T  20052006 ccatgtattcaaggtttcaaactctt 20051981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 5761004 - 5760765
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    |||||||||||||| || |||||||| || || | ||| || ||||| ||| | || || ||||| || ||  ||||||||||| || |||||||||  |    
T  5761004 tctacctatgaagggaaccaacaggttaacgaagctaaagctaaccaattgatacatcagtatgatctcttacaaatgaaggaagatgaagatattggca 5760905  T
Q  122 ccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttaggagtcttcc 221  Q
    | ||| | |||||||||||||| ||||| |  | ||||||||||||||  || || |||    ||||| || || |||||||||||||||||||||||||    
T  5760904 ctatgtactcaaggtttcaaacccttgtgtatggccttcaagttttgaaaaagagttattatctacctaatcatgtcaagaagattcttaggagtcttcc 5760805  T
Q  222 tgccaagttcaaaccaaaggtaacaaccattcaagaagca 261  Q
    || |||||||| ||||||||  ||||| ||||| ||||||    
T  5760804 tgtcaagttcagaccaaaggctacaactattcaggaagca 5760765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 4448015 - 4447882
Alignment:
Q  18 gtgttctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatatt 117  Q
    |||| |||||||||||||||| ||||| | ||| || || ||||| ||||| ||||| || || ||||| ||||| | |||||||||  || ||||||||    
T  4448015 gtgtgctacctatgaaggaaaccaacaagaaaaggaagtgaaggctaaccaattggtgcatcagtatgacctttttagaatgaaggatgatgaagatatt 4447916  T
Q  118 gaaaccatgcattcaaggtttcaaactcttgtat 151  Q
     |||| ||| ||||||||||| ||||||||||||    
T  4447915 aaaactatgtattcaaggttttaaactcttgtat 4447882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 18085795 - 18085853
Alignment:
Q  91 ttcaaaatgaaggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttgt 149  Q
    ||||||||||||||  || ||||||||||||| |||  ||||||||||||||| |||||    
T  18085795 ttcaaaatgaaggatgatgaagatattgaaactatggtttcaaggtttcaaacacttgt 18085853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 8969531 - 8969587
Alignment:
Q  88 cttttcaaaatgaaggaaaattaagatattgaaaccatgcattcaaggtttcaaactc 145  Q
    |||||||| |||||| || || ||||||||||||||| | ||||||||||||||||||    
T  8969531 cttttcaagatgaagaaagatgaagatattgaaacca-gtattcaaggtttcaaactc 8969587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 31217488 - 31217283
Alignment:
Q  49 aaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttg 148  Q
    ||||| |||||| | ||| | |||||||| ||||||| |||||| | |||||||||| || |||||||||||||||||   | ||||||||| |||||||    
T  31217488 aaagaagttaagcctaactatttggttcatcaatatgggctttttataatgaaggaatatgaagatattgaaaccatgttataaaggtttcagactcttg 31217389  T
Q  149 tatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttaggagtcttcctgccaagttcaaaccaaaggtaacaac 248  Q
    ||||     |||| ||| ||| |||||||||||   | |||||  || |||||||||||||||| | ||||||||| | ||||| ||||||||| |||||    
T  31217388 tatctagtgttcaggttctgaataaaagatatattgttcctgaccatgtcaagaagattcttagaaatcttcctgctaggttcagaccaaaggttacaac 31217289  T
Q  249 cattca 254  Q
    ||||||    
T  31217288 cattca 31217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 23602128 - 23602335
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    |||||||| || ||||  |||||  ||||||| |||||| | |||  |||||| || || ||||| || |||| |||||||||| || |||| | | |||    
T  23602128 tctacctacgagggaatccaacaaataaaagaagttaagactaacatgttggtccaacattatgatctcttcataatgaaggaagatgaagacaataaaa 23602227  T
Q  122 ccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttaggagtcttcc 221  Q
    |||||   ||||||||||| ||  | ||||||| ||||||||||||||  || || ||||||| ||||||| || ||||||||||| | ||||||||| |    
T  23602228 ccatgtcctcaaggtttcagaccttggtatcaggccttcaagttttgaccaagagctatacaacacctgatcatgtcaagaagattttgaggagtctttc 23602327  T
Q  222 tgccaagt 229  Q
    ||||||||    
T  23602328 tgccaagt 23602335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 10480969 - 10480776
Alignment:
Q  31 gaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaaccatgcatt 130  Q
    |||||||||||||| |  ||| ||| |||||| || || ||||||||||||||||| || || | |||||||||   | |||||||||||  | ||||||    
T  10480969 gaaggaaatcaacaagccaaaaaggctaaggcaaatcaattggttcaccaatatgaactctttagaatgaaggagggtgaagatattgaagtcgtgcatt 10480870  T
Q  131 caaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatatacaatacctgattatatcaagaagattcttaggagtcttcctgc 224  Q
     ||||||||||||||||||||  || ||||| ||| |||  || || | |    |||||||| || |||||| |||||||||||||||||||||    
T  10480869 taaggtttcaaactcttgtatatgatcttcaggttctgaagaagagctttgatgtacctgatcatgtcaagatgattcttaggagtcttcctgc 10480776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 19217562 - 19217706
Alignment:
Q  82 tatgagcttttcaaaatgaaggaaaattaagatattgaaaccatgcattcaaggtttcaaactcttgtatcagaccttcaagttttgagtaaaagatata 181  Q
    ||||| ||||| ||||||||||||||| ||||||||||||| |||   ||||||||| ||||||||||    |||||||||||| |||  ||||| ||||    
T  19217562 tatgatctttttaaaatgaaggaaaatgaagatattgaaacaatgttctcaaggtttaaaactcttgtgaatgaccttcaagttctgaacaaaagttata 19217661  T
Q  182 caatacctgattatatcaagaagattcttaggagtcttcctgcca 226  Q
       ||| |||  || | ||||| ||||| |||||||| |||||||    
T  19217662 ttgtacgtgaccatgtgaagaatattctaaggagtctccctgcca 19217706  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 151
Target Start/End: Original strand, 17931805 - 17931928
Alignment:
Q  28 tatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaaccatgc 127  Q
    ||||||||||| |||||  | ||||||| |||||| ||||  |||||  | ||||||||| |||  | |||||||||||||  ||||||||||||||||     
T  17931805 tatgaaggaaaccaacaattgaaagaggctaaggctaaccttttggtcaaacaatatgaggtttaaagaatgaaggaaaatggagatattgaaaccatgt 17931904  T
Q  128 attcaaggtttcaaactcttgtat 151  Q
     |||||||||||| ||||||||||    
T  17931905 tttcaaggtttcagactcttgtat 17931928  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 24278435 - 24278562
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    |||||||||||||| |  |||||||| ||||| | ||| |  ||||| ||||| || ||||||||||| || | |||||||||| ||  |||||||||||    
T  24278435 tctacctatgaagggatccaacaggttaaagaagctaaagttaaccaattggtacatcaatatgagctctttagaatgaaggaagatggagatattgaaa 24278534  T
Q  122 ccatgcattcaaggtttcaaactcttgt 149  Q
     |||| | ||||||||||||||||||||    
T  24278535 tcatgtactcaaggtttcaaactcttgt 24278562  T

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Target: scaffold0412 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 841 - 967
Alignment:
Q  22 tctacctatgaaggaaatcaacaggtaaaagaggttaaggccaaccagttggttcaccaatatgagcttttcaaaatgaaggaaaattaagatattgaaa 121  Q
    ||||||||  ||| |||||| ||||| || || | |||||| ||||| ||||||||| | || |||||| |||| ||||| ||  || ||||| ||||||    
T  841 tctacctacaaagaaaatcagcaggtgaaggaagctaaggcaaaccaattggttcactagtaggagcttgtcaagatgaaagatgataaagat-ttgaaa 939  T
Q  122 ccatgcattcaaggtttcaaactcttgt 149  Q
    |||||  |||||||||||||||||||||    
T  940 ccatgtcttcaaggtttcaaactcttgt 967  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 25917552 - 25917609
Alignment:
Q  197 tcaagaagattcttaggagtcttcctgccaagttcaaaccaaaggtaacaaccattca 254  Q
    ||||||| ||| ||||||||| ||||||||  ||||  ||||||||||||||||||||    
T  25917552 tcaagaatatttttaggagtcatcctgccagattcattccaaaggtaacaaccattca 25917609  T

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