View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_29 (Length: 275)
Name: NF14282_low_29
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14857020 - 14857257
Alignment:
| Q |
1 |
agaataagtgtcgtctctgatgcatggtttaagaaaataggcgcttttgacagtttggttttcagcagatgatggtgaaaccatgagttcttttctagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14857020 |
agaataagtgtcgtctctgatgcatggtttaagaaaataggcggttttgacagtttggttttcagcagatgatggtgaaaccatgagttcttttctagct |
14857119 |
T |
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| Q |
101 |
tctatgatgttgatgctttcatccattttcgtaaaagtgacaaaaacaaaatggnnnnnnngttaccgaaagctgtacaagtttgtcgttagaaaaagag |
200 |
Q |
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| T |
14857120 |
cctatgatgttgatgctttcatccattttcgtaaaagtgacaaaaacaaaatggtttttttgttactgaaagctgtacaagtttgtcgttagaaaaagag |
14857219 |
T |
|
| Q |
201 |
tttctgcaacttcccaaccatttttcacatttattaag |
238 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
14857220 |
tttctgcaatttcccaaccatttttcacatttattaag |
14857257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 19967182 - 19967050
Alignment:
| Q |
21 |
tgcatggtttaagaaaataggcgcttttgacagtttggttttcagcagatgatggtgaaaccatgagttcttttctagcttctatgatgttgatgctttc |
120 |
Q |
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||||||||||||| |||||||| || ||| |||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||| |
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| T |
19967182 |
tgcatggtttaaggaaataggcagttctgaatgtttggttttcatcagatgagggtgagaccatgagttcttgtctagcttctatgatgttgatgttttc |
19967083 |
T |
|
| Q |
121 |
atccattttcgtaaaagtgacaaaaacaaaatgg |
154 |
Q |
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| T |
19967082 |
ttccattttcggaaaa-tgacaaagaaaaaatgg |
19967050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 20021076 - 20021190
Alignment:
| Q |
1 |
agaataagtgtcgtctctgatgcatggtttaagaaaataggcgcttttgacagtttggttttcagcagatgatggtgaaaccatgagttcttttctagct |
100 |
Q |
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||||| |||||| | | ||||||||||||| || |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||| ||| | | |
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| T |
20021076 |
agaatcagtgtcttttttgatgcatggtttgaggaaataggcagttctgacagtttggttttcaccagatgatagtgaaaccatgagttcttgtctggat |
20021175 |
T |
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| Q |
101 |
tctatgatgttgatg |
115 |
Q |
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||||||||||||||| |
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| T |
20021176 |
tctatgatgttgatg |
20021190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 14857965 - 14858007
Alignment:
| Q |
230 |
tttattaagtgtacttgggatgacatcacacactcaagtataa |
272 |
Q |
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| T |
14857965 |
tttattaagtgtacttgggatgacatcacacactcaagtataa |
14858007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 20021333 - 20021368
Alignment:
| Q |
237 |
agtgtacttgggatgacatcacacactcaagtataa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
20021333 |
agtgtacttgggatgacatcacacactcaagtataa |
20021368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 19966875 - 19966843
Alignment:
| Q |
236 |
aagtgtacttgggatgacatcacacactcaagt |
268 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
19966875 |
aagtgtacttgggatgacatcacacaatcaagt |
19966843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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