View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14282_low_34 (Length: 260)

Name: NF14282_low_34
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14282_low_34
NF14282_low_34
[»] chr4 (2 HSPs)
chr4 (6-215)||(20784708-20784919)
chr4 (29-190)||(39492580-39492742)
[»] chr8 (5 HSPs)
chr8 (17-131)||(31080500-31080612)
chr8 (42-120)||(31004459-31004537)
chr8 (41-94)||(10645208-10645261)
chr8 (41-88)||(155632-155678)
chr8 (32-85)||(26470580-26470633)
[»] chr2 (3 HSPs)
chr2 (42-115)||(23650600-23650673)
chr2 (61-131)||(16801867-16801937)
chr2 (61-131)||(16841153-16841223)
[»] chr3 (1 HSPs)
chr3 (194-235)||(34591190-34591231)
[»] chr7 (1 HSPs)
chr7 (44-85)||(20037039-20037080)
[»] chr6 (1 HSPs)
chr6 (194-235)||(4806605-4806646)
[»] chr1 (2 HSPs)
chr1 (54-131)||(13782850-13782926)
chr1 (198-238)||(26700217-26700257)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 20784708 - 20784919
Alignment:
Q  6 aggaaggaagcaaccaaagtcacttgggagctaaggaatcatcaactggtgatccttttatcatgttcttttattcatatataat--tatacgtgtttat 103  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  20784708 aggaaggaagcaaccaaagtcacttgggagccaaggaatcatcaactggtgatccttttatcatgttcttttattcatatataatattatacatgtttat 20784807  T
Q  104 gaatcatgaggagctaaatcctccctagaatatgttatgaacgaggaccttcagtgtaattaattgttaatgcaattttaaataattatataaagggtct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  20784808 gaatcatgaggagctaaatcctccctagaatatgttatgaacgaggacattcagtgtaattaattgttaatgcaactttaaataattatataaagagtct 20784907  T
Q  204 tgttaatgagtg 215  Q
    ||||||| ||||    
T  20784908 tgttaataagtg 20784919  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 39492580 - 39492742
Alignment:
Q  29 ttgggagctaaggaatcatcaactggtgatccttttatcatgttcttttattcatatataattatacgtgtttatgaa-tcatgaggagctaaatcctcc 127  Q
    |||||||| ||| ||||||||||   | |||||||| | |||||||||||||||||||||| ||||||||||||  || |||||||| ||||| |||||     
T  39492580 ttgggagccaagcaatcatcaacccataatccttttcttatgttcttttattcatatataaatatacgtgtttaaaaattcatgaggggctaattcctct 39492679  T
Q  128 ctagaatatgttatgaacgaggaccttcagtgtaattaattgttaatgcaattttaaataatt 190  Q
    ||||  || |||||||| ||| | ||||  ||||||||||  || ||| || |||||||||||    
T  39492680 ctaggttaagttatgaaagagaaacttccttgtaattaatcattcatgtaactttaaataatt 39492742  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 31080500 - 31080612
Alignment:
Q  17 aaccaaagtcacttgggagctaaggaatcatcaactggtgatccttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgaggag 116  Q
    ||||| || |||| |||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  31080500 aaccagagacactcgggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcatatataattata--tgtttagaaatcatgaggag 31080597  T
Q  117 ctaaatcctccctag 131  Q
    ||||| |||| ||||    
T  31080598 ctaaaccctctctag 31080612  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 31004537 - 31004459
Alignment:
Q  42 aatcatcaactggtgatccttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgaggagctaa 120  Q
    |||||||||  | ||||| ||||||||||||||||||||||| || ||||||| ||||||| |||||||||| ||||||    
T  31004537 aatcatcaatcgttgatcattttatcatgttcttttattcatgtacaattatatgtgtttaggaatcatgagtagctaa 31004459  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 10645261 - 10645208
Alignment:
Q  41 gaatcatcaactggtgatccttttatcatgttcttttattcatatataattata 94  Q
    ||||||||||  |||||||||||| |||||||||||| ||||| ||||||||||    
T  10645261 gaatcatcaatcggtgatccttttctcatgttcttttgttcatgtataattata 10645208  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 155632 - 155678
Alignment:
Q  41 gaatcatcaactggtgatccttttatcatgttcttttattcatatata 88  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||    
T  155632 gaatcatcaattg-tgatccttttctcatgttcttttattcatatata 155678  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 26470580 - 26470633
Alignment:
Q  32 ggagctaaggaatcatcaactggtgatccttttatcatgttcttttattcatat 85  Q
    ||||| || ||||||||||| |||||||||||| ||||| | ||||||||||||    
T  26470580 ggagccaatgaatcatcaacgggtgatccttttctcatgctattttattcatat 26470633  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 23650600 - 23650673
Alignment:
Q  42 aatcatcaactggtgatccttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgagga 115  Q
    |||||||||  |||||||||||| ||||||| ||||||||||||| || |||| |||||||  |||||||||||    
T  23650600 aatcatcaatcggtgatccttttctcatgttattttattcatatacaaatatatgtgtttagaaatcatgagga 23650673  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 16801867 - 16801937
Alignment:
Q  61 ttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgaggagctaaatcctccctag 131  Q
    |||| ||||||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||| ||| ||||    
T  16801867 ttttctcatgttctcttattcatatataattatatgtgcttagaaatcatgagtagctaaatactctctag 16801937  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 16841153 - 16841223
Alignment:
Q  61 ttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgaggagctaaatcctccctag 131  Q
    |||| ||||||||| ||||||||||||||||||| ||| |||  ||||||||| |||||||| ||| ||||    
T  16841153 ttttctcatgttctcttattcatatataattatatgtgcttagaaatcatgagtagctaaatactctctag 16841223  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 34591231 - 34591190
Alignment:
Q  194 taaagggtcttgttaatgagtgtcttcggaatactctttaaa 235  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  34591231 taaagggtcttgttaacgagtgtcttcggaatattctttaaa 34591190  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 20037080 - 20037039
Alignment:
Q  44 tcatcaactggtgatccttttatcatgttcttttattcatat 85  Q
    ||||||||||||||||||||| ||||||| | ||||||||||    
T  20037080 tcatcaactggtgatccttttctcatgttttcttattcatat 20037039  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 4806646 - 4806605
Alignment:
Q  194 taaagggtcttgttaatgagtgtcttcggaatactctttaaa 235  Q
    |||||||||||||||| |||||||||||| ||| ||||||||    
T  4806646 taaagggtcttgttaacgagtgtcttcgggatattctttaaa 4806605  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 13782850 - 13782926
Alignment:
Q  54 gtgatccttttatcatgttcttttattcatatataattatacgtgtttatgaatcatgaggagctaaatcctccctag 131  Q
    ||||| ||||| ||||||| | |||||||||| || ||||| |||||||  ||| ||||| |||||||||||||||||    
T  13782850 gtgatacttttctcatgtt-tcttattcatatgtagttatatgtgtttagaaattatgagtagctaaatcctccctag 13782926  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 26700217 - 26700257
Alignment:
Q  198 gggtcttgttaatgagtgtcttcggaatactctttaaacat 238  Q
    |||||||||||||||||||||  | ||||||||||||||||    
T  26700217 gggtcttgttaatgagtgtctctgaaatactctttaaacat 26700257  T

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