View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_40 (Length: 240)
Name: NF14282_low_40
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_40 |
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| [»] scaffold0142 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 17365508 - 17365390
Alignment:
| Q |
17 |
atggaaccaagaagggtaattgggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaatcttacccaataaaatggtaaagccattttgtat |
116 |
Q |
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| T |
17365508 |
atggaaccaaggagggtagttgggttcgaaagacaaagtgaagtctgcactaggtaatgctgggaatcttacgtagtaaaatgctaaagccattttgtat |
17365409 |
T |
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| Q |
117 |
ttggctagtacattgttca |
135 |
Q |
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| T |
17365408 |
ctggctagtgcgttgttca |
17365390 |
T |
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Target: scaffold0142 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 12470 - 12426
Alignment:
| Q |
39 |
ggttcaaaagacaaggtgaagtctgcactaggtaatgctgggaat |
83 |
Q |
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| T |
12470 |
ggttcgaaagacaaagtgaagtctgcactaggcaatgctgggaat |
12426 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 23006937 - 23006850
Alignment:
| Q |
136 |
catacctttagttttcttcgatatgttctgcaaagaaggaaaagcactaatcagtttagtgcgaaatgttggttcatcaacaaggttg |
223 |
Q |
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| T |
23006937 |
catacctttattttccttcgacttgctctgcaaagaaggaaaagcagtgatcaagttggtacgaaatgctggttcgtcgacaaggttg |
23006850 |
T |
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