View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_42 (Length: 235)
Name: NF14282_low_42
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_42 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 30013914 - 30014043
Alignment:
| Q |
92 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30013914 |
tagttactgatgagaatcttaagcaacaaattatgtcctcactagatgcagctatctatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30014013 |
T |
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| Q |
192 |
cacgccgtaacagcaaaaacaccacaaaca |
221 |
Q |
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| T |
30014014 |
cacgctgtaacagcaaaaataccacaaaca |
30014043 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 30073367 - 30073450
Alignment:
| Q |
13 |
aatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttctagtt |
96 |
Q |
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| T |
30073367 |
aatattgatgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttctagtt |
30073450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 30013782 - 30013865
Alignment:
| Q |
13 |
aatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttctagtt |
96 |
Q |
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| T |
30013782 |
aatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaacagtacttatgaaatacggaaagtttgcttctagtt |
30013865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 30073498 - 30073599
Alignment:
| Q |
92 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
191 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30073498 |
tagttactgatgagaatcttaagcaacaaattatatcctcactagatgcagctatatatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30073597 |
T |
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| Q |
192 |
ca |
193 |
Q |
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|| |
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| T |
30073598 |
ca |
30073599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 102 - 205
Target Start/End: Complemental strand, 8348 - 8245
Alignment:
| Q |
102 |
tgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348 |
tgagaatcttaagcaacaaattatgtcctcactagaagcaactatctatcagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
8249 |
T |
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| Q |
202 |
cagc |
205 |
Q |
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|||| |
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| T |
8248 |
cagc |
8245 |
T |
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