View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_6 (Length: 537)
Name: NF14282_low_6
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_6 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 20423216 - 20423722
Alignment:
| Q |
19 |
atcatttttgctaacaatgtcaactcacttctcaggttagttagttaattaatcaatagggtttgtgttgggnnnnnnnnnnnnncaaagcaaaaggtag |
118 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20423216 |
atcatttttgctaacaatgtcgactcacttctcaggttagttagttaattaatcaatagggtttgtgttgggttttttattttttcaaagcaaaaggtag |
20423315 |
T |
|
| Q |
119 |
tgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatcaggtcagagtttgtatacacaattat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20423316 |
tgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatcaggtcagagtttgtatacacaattat |
20423415 |
T |
|
| Q |
219 |
gatagttttgttggaatgttttggtagttgatgtggttttatatacatgtaattttagtaatcactagatgtgatgtagtctgtgtgtgtttgatgagtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20423416 |
gatagttttgttggaatgttttggtagttgatgtggttttatatacatgtaattttagtaatcagtagatgtgatgtagtctgtgtgtgtttgatgagtg |
20423515 |
T |
|
| Q |
319 |
atttttgttcttgtagaaaaacgagcaagaagtgtatgcatgtaaatctcacaagcgacatgtgataaagtacgaaaaccattcggtcaagaggtgacac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20423516 |
atttttgttcttgtagaaaaacgagcaagaagtgtatgcatgtaaatctcacaagcgacatgtgataaagtacgaaaaccattcggtcaagaggtaacac |
20423615 |
T |
|
| Q |
419 |
acttttgaattgattcaaataagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtatggttggatattaatgtttagtctcttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20423616 |
acttttgaattgattcaaataagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtatggttggatattaatgtttagtctcttg |
20423715 |
T |
|
| Q |
519 |
ttgcctt |
525 |
Q |
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||||||| |
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| T |
20423716 |
ttgcctt |
20423722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 109 - 525
Target Start/End: Complemental strand, 9883170 - 9882752
Alignment:
| Q |
109 |
caaaaggtagtgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatcaggtcagagtttgtat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9883170 |
caaaaggtagtgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataactttgaaaggtatcaggtcagagtttgtat |
9883071 |
T |
|
| Q |
209 |
acacaattatgatagttttgttggaatgttttggtagttgatgtggttttatatacatgtaattttagtaatcactagatgtgatgtagtctgtgtgtgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
9883070 |
acacaattatgatagttttgttggaatgttttggtagttgatgtggttttatatacatgtggttttagtaatcagtagatgtgatgtagtctgtgtatgt |
9882971 |
T |
|
| Q |
309 |
ttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcatgtaaatctcacaagcgacatgtgataaagtacgaaaac---cattcggt |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
9882970 |
ttgatgagtgatttttgttcttgtagaaaaacgagcaagaagtgtatgcaagtaaatctcacaagcgacatgtgataaagtacaaaaaccatcattcggt |
9882871 |
T |
|
| Q |
406 |
caagaggtgacacacttttgaattgattcaaataagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtatggttggatattaat |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9882870 |
taagaggtgacacacttttgaattgattcaaataagattgaagatttgttcaatgcatcttttaccttacaattgcatgagagtat-gttggatattaat |
9882772 |
T |
|
| Q |
506 |
gtttagtctcttgttgcctt |
525 |
Q |
| |
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|||||||||||||||||||| |
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| T |
9882771 |
gtttagtctcttgttgcctt |
9882752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 4651811 - 4651513
Alignment:
| Q |
19 |
atcatttttgctaacaatgtcaactcacttctcaggttagttagttaattaatcaatagggtttgtgttgggnnnnnnnnnnnnncaaagcaaaaggtag |
118 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||||| |||| || |||||||||| |||| | ||||||||||| |
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| T |
4651811 |
atcattttggctaacaatgtcgactcacttctcaggttagttagttaactaattaacagggtttgtgctgggttttttttttctgga--gcaaaaggtag |
4651714 |
T |
|
| Q |
119 |
tgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatcaggtcagagtttgtatacacaattat |
218 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||| | |
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| T |
4651713 |
tgaaacttatgcatgagactattcatgttgttgtgcttgatttcttttccgcaattataacttagaaaggtattggggcagagtttgtatacataattgt |
4651614 |
T |
|
| Q |
219 |
gatagttttgttggaatgttttggtagttgatgtggttttatatacatgtaattttagtaatcactagatgtgatgtagtctgtgtgtgtttgatgagtg |
318 |
Q |
| |
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|||||||| ||| ||||||||| |||||||||||| ||||||||||||| ||||| |||||| |||| ||||||| | | ||||||||||||||||| |
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| T |
4651613 |
gatagtttcattgaaatgttttgctagttgatgtggatttatatacatgtggttttaataatcagtagaggtgatgtgg--tttgtgtgtttgatgagtg |
4651516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 111 - 241
Target Start/End: Original strand, 37077619 - 37077750
Alignment:
| Q |
111 |
aaaggtagtgaaacctatgcatgagactattcatgttgttatgcttggtttcttttccgcagttataacttagaaaggtatca-ggtcagagtttgtata |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
37077619 |
aaaggtagtgaaacttatgcatgagactattcatgttgttgtgcttggtttcttttccgcagttataacttggaaaggtatcaggggtagagtttgtata |
37077718 |
T |
|
| Q |
210 |
cacaattatgatagttttgttggaatgttttg |
241 |
Q |
| |
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|| |||| ||||||||| ||||||||||||| |
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| T |
37077719 |
cataattgtgatagtttcattggaatgttttg |
37077750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 30800300 - 30800230
Alignment:
| Q |
447 |
agatttgttcaatgcatcttttaccttacaattgcatgagagtatggttggatattaatgtttagtctcttg |
518 |
Q |
| |
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|||||||||||||||||||||| ||| ||||||||||||||| || || |||| | ||||| ||||||||| |
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| T |
30800300 |
agatttgttcaatgcatcttttgtcttgcaattgcatgagagtgtgttttgata-tcatgttaagtctcttg |
30800230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 19162 - 19092
Alignment:
| Q |
19 |
atcatttttgctaacaatgtcaactcacttctcaggttagttagttaattaatcaatagggtttgtgttgg |
89 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19162 |
atcattttggctaacgatgtcgactcacttctcaggttagttagttaattaatcaatagggtttgtgttgg |
19092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 22068749 - 22068679
Alignment:
| Q |
19 |
atcatttttgctaacaatgtcaactcacttctcaggttagttagttaattaatcaatagggtttgtgttgg |
89 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22068749 |
atcattttggctaatgatgtcgactcacttctcaggttagttagttaattaatcaatatggtttgtgttgg |
22068679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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