View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_7 (Length: 534)
Name: NF14282_low_7
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 1370824 - 1370319
Alignment:
| Q |
18 |
tggtcaagccattatatttattcatcatgtatgtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaatta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1370824 |
tggtcaagccattatatttattcatcatgtatgtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaatta |
1370725 |
T |
|
| Q |
118 |
caagttgatatgtatggaatttaattactgaattttgttgggacaactctcaagggttcacattttctcaaggcaagtccttgtattgcatcttccatgt |
217 |
Q |
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||||||| || ||| |||||||||||||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1370724 |
caagttgctacgtagggaatttaattactgattttggttggaataactctcaaggattcacattttctcaaggcaagtccttgtattgcatcttccatgt |
1370625 |
T |
|
| Q |
218 |
ctatttcttcaggtttcgtatcattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaacatcctcatagctaatggcaaacc |
317 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1370624 |
ctatttcttcaggtttcatatcattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaacatcctcatagctaatggcaaacc |
1370525 |
T |
|
| Q |
318 |
gggacaaattcgtctgccactgccaaacggcgtgagctgaaaattttgtcccttgatatcgagctttgttcccaaaaacctctctggtgaaaataaatat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1370524 |
gggacaaattcgtctgccactgccaaacggcgtgagctgaaaattttgtcccttgatatcgagctttgttcccaaaaacctctctggtgaaaataaatat |
1370425 |
T |
|
| Q |
418 |
ggattgtcccacacttctgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaatggtgtagccattgacttctacatcttcct |
517 |
Q |
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| T |
1370424 |
ggattgtcccacacttctgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaatggtgtagccattgacttctacatcttcct |
1370325 |
T |
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| Q |
518 |
ttgctt |
523 |
Q |
| |
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|||||| |
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| T |
1370324 |
ttgctt |
1370319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 32 - 523
Target Start/End: Complemental strand, 1365122 - 1364630
Alignment:
| Q |
32 |
tatttattcatcatgt--atgtctactcacactactatgtttaatttccttatacatgccatttattgcaatacatgtaaaagaattacaagttgatatg |
129 |
Q |
| |
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|||||||| ||||||| |||| |||||||||| |||||| |||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| || | |
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| T |
1365122 |
tatttattgatcatgtctatgtttactcacactgctatgtctaatttccttg-acaggccatttattgaaatacacgtaaaagaattacaagttgctacg |
1365024 |
T |
|
| Q |
130 |
tatggaatttaattactgaattttgttgggacaactctcaagggttcacattttctcaaggcaagtccttgtattgcatcttccatgtctatttcttcag |
229 |
Q |
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| T |
1365023 |
tagggaatttaattactgattttggttggaataactctcaaggattcacattttctcaaggcaagtccttgtattgcatcttccatgtctatttcttcag |
1364924 |
T |
|
| Q |
230 |
gtttcgtatcattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaacatcctcatagctaatggcaaaccgggacaaattcg |
329 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| |
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| T |
1364923 |
gtttcataccattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaacatcctcatagccaaaggcaagccgggacatattcg |
1364824 |
T |
|
| Q |
330 |
tctgccactgccaaacggcgtgagctgaaaattttgtcccttgatatcgagctttgttcccaaaaacctctctggtgaaaataaatatggattgtcccac |
429 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||| |
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| T |
1364823 |
ccttccactgccaaacggcgtgagctgaaaattttgtcccttgatatcaagctttgttcctaaaaacctctctggcgaaaataaatttggattgtcccat |
1364724 |
T |
|
| Q |
430 |
acttctgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaatggtgtagccattgacttctacatcttcctttgctt |
523 |
Q |
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| T |
1364723 |
acttttggatctctaccaatagcccacacattaacgaaaatttgtgcaccttttggaatgaggtagccattgacttctacgtcttcctttgctt |
1364630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 94 - 523
Target Start/End: Original strand, 1406365 - 1406794
Alignment:
| Q |
94 |
attgcaatacatgtaaaagaattacaagttgatatgtatggaatttaattactgaattttgttgggacaactctcaagggttcacattttctcaaggcaa |
193 |
Q |
| |
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|||| |||||| ||||||||||||||||||| || ||| |||||||||||||||| ||| ||||| | ||||||||||| |||||||||||||||||||| |
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| T |
1406365 |
attgaaatacacgtaaaagaattacaagttgctacgtagggaatttaattactgattttggttggaataactctcaaggattcacattttctcaaggcaa |
1406464 |
T |
|
| Q |
194 |
gtccttgtattgcatcttccatgtctatttcttcaggtttcgtatcattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1406465 |
gtccttgtattgcatcttccatgtctatttcttcaggtttcatatcattttctagcttccaatcaaaagaaattagtaatgatcccaacatcatgtgcaa |
1406564 |
T |
|
| Q |
294 |
catcctcatagctaatggcaaaccgggacaaattcgtctgccactgccaaacggcgtgagctgaaaattttgtcccttgatatcgagctttgttcccaaa |
393 |
Q |
| |
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|||||||||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
1406565 |
catcctcatagccaaaggcaagccgggacatattcgccttccactgccaaacggcgtgagctgaaaattttgtcccttgatatcaagctttgttcctaaa |
1406664 |
T |
|
| Q |
394 |
aacctctctggtgaaaataaatatggattgtcccacacttctgggtctctaccaatagcccatacattaacgaagatttgtgcatctttcggaatggtgt |
493 |
Q |
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||||||| ||| |||||||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||||||| ||||||||| |||| |||||| || |
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| T |
1406665 |
aacctctttggcgaaaataaatttggattgtcccatacttttggatctctaccaatagcccacacattaacgaaaatttgtgcaccttttggaatgaggt |
1406764 |
T |
|
| Q |
494 |
agccattgacttctacatcttcctttgctt |
523 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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|
| T |
1406765 |
agccattgacttctacgtcttcctttgctt |
1406794 |
T |
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