View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14282_low_8 (Length: 521)
Name: NF14282_low_8
Description: NF14282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14282_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 42154631 - 42155111
Alignment:
| Q |
8 |
cagcagagaaatagtggagaaacaaggta-tcctattccctttcaatcttcaagaatttcctttagtcaattttgttattagtgatgcataatagtacta |
106 |
Q |
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| T |
42154631 |
cagcagagaaatagtggagaaacaaggtaatcctattccctttcaatcttcaagaatttcctttagtcaattttgttattag------------------ |
42154712 |
T |
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| Q |
107 |
tagtaattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatggactagtaaagattgacaccatttcat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |
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| T |
42154713 |
---taattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatgggctagaaaagattgacaccatt-cat |
42154808 |
T |
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| Q |
207 |
atttttggtta-taaa--ttacaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaat |
303 |
Q |
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| T |
42154809 |
atttttggtttgtgaacttttaaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaat |
42154908 |
T |
|
| Q |
304 |
accaagtatcgagtaattataaaggtattgtaatttatctcataaatagagcttggaagaatcaaatactctagcataccttttctattcttatcagttc |
403 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
42154909 |
actaagtatcaagtaattataaaggtattgtaatttatctcataaatagagcttggaaga-tcaaatactctagcataccttttctattcttatctgttc |
42155007 |
T |
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| Q |
404 |
aaagagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaatttagaataaatcatgtgaaaaatgaaaagcctaagatggaag |
503 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42155008 |
aaggagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaatttagaataaatcatgtgaaaaatgaaaagcctaagatggaag |
42155107 |
T |
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