View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14283_high_11 (Length: 349)
Name: NF14283_high_11
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14283_high_11 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 4342593 - 4342914
Alignment:
| Q |
10 |
tgagatgaagatattttgactttattttatgttttgtataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaaga |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342593 |
tgagatgaagatatcttgactttattttatgttttgtataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaaga |
4342692 |
T |
|
| Q |
110 |
cagacttgttcattgctgattatccggtcggaatcgattctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342693 |
cagacttgttcattgctgattatccggtcggagtcgattctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactact |
4342792 |
T |
|
| Q |
210 |
agggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4342793 |
agggatgtgggggatgggtggaatggggaaaaccaccattgcaaaagccatttacaataaaattggtcgcaattttgaagccaggagctttcttgcaaat |
4342892 |
T |
|
| Q |
310 |
attagggaggtttgggagcaag |
331 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4342893 |
attagggaggtttgggagcaag |
4342914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 48 - 325
Target Start/End: Complemental strand, 4323415 - 4323138
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| |||||| || |||||||||||||||||| |||||||| |||| || || |||||| |
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|
| T |
4323415 |
taggaacgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttactggacaagacagacttgttcgttgctgataatcctgtgggtatcgat |
4323316 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
4323315 |
tctcgagtgcaagatatgattcaacttctagacactcaacaaacaaatgatgttctactactagggatgtgggggatgggtggaattggaaaaaccaccg |
4323216 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttggg |
325 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
4323215 |
ttgcaaaggccatttacaataaaattggtcgcaattttgaaggtaggagctttattgcaaatattagggaggtttggg |
4323138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 48 - 332
Target Start/End: Original strand, 4358099 - 4358383
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||| ||||| |
|
|
| T |
4358099 |
taggaatgaaagtgaggttatcagggatattgttgaaaatgttactcgtttgcttgacaagacagacttgttcattgctgataatccagtaggagtcgat |
4358198 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4358199 |
tctcgagtgcaagatatgattcaactcctagaaactcaacaatcaaacgatgctctactactagggatgtgggggatgggtggaatcggaaaaaccacca |
4358298 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaagc |
332 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4358299 |
ttgcaaaatccatttacaataaaattggtcgcaattttgaaggtaggagctttcttgaaaatattagggaggtttgggagcaagc |
4358383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 47 - 331
Target Start/End: Complemental strand, 4126751 - 4126467
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
4126751 |
ataggaacgaatgtgaggttatcaaggatattgttgaaaatgttacaaatttgcttgacaagacagacttgttcattgctgataatcctgtcggagtcga |
4126652 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4126651 |
atctcgagtgcaagatatgattcaacttctagacactcaacagtcaaatgatgttctactgctggggatgtgggggatgggtggaattggtaaaaccacc |
4126552 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4126551 |
attgcaaaagccatttacaataaaattggccggaattttgaaggtaggagctttcttgcaaatataagggaggtttgggagcaag |
4126467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 331
Target Start/End: Original strand, 4350919 - 4351203
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||| ||||||| ||||||||| |||||| ||||||| |||| |||| || ||| |||| |
|
|
| T |
4350919 |
ataggaatgaaagtgaggttatcaagggtattgttgaaaatattacacgtttgtttgacaagatagacttattcattgttgataatcctgtgggagtcga |
4351018 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| || ||| ||||| |
|
|
| T |
4351019 |
atctcaggtgcaagatatgattaaacttctagacactcaccaatcaaaagatgttctactaatagggatgtgggggatgggtggaatcggcaaatccacc |
4351118 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaag |
331 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4351119 |
gttgcaaaagccatttacaataaaattggccgcaattttgaaggtaggagttttcttgcaaatattagggaggttggggagcaag |
4351203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 47 - 327
Target Start/End: Original strand, 4333240 - 4333520
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
4333240 |
ataggaacgaaagtgaggtcatcaaggatattgttgaaaatgttgcacgtttgcttgacaagactgacttgttcattgctgatcatccggtaggagtcga |
4333339 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| ||||||| | |||||||| ||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
4333340 |
atctcgagtacaagatatgattcaacttctagacactcaactatcaaataaagttctactgctaggaatgtgggggatgggtgggattgggaaaaccaca |
4333439 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
|||| || |||||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4333440 |
attgcgaaggccatttacaataaaattggccgcaaatttcaaggtaggagctttcttgcaaatattagggaggtttgggag |
4333520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 46 - 331
Target Start/End: Original strand, 4330173 - 4330461
Alignment:
| Q |
46 |
tataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcg |
145 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||||||| || ||| ||||| |||| |||||| |||||||||||| ||||||| | ||| |
|
|
| T |
4330173 |
tataggaatgaaagagaagttatcaagaatattgttgaaaatgttacactttttcttgataagatagacttattcattgctgataatccggtggaaatta |
4330272 |
T |
|
| Q |
146 |
attctcgagtgcaagatatgattcaacttatagacactca---acaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaac |
242 |
Q |
| |
|
| ||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||| || |||| |
|
|
| T |
4330273 |
aatctcgagtgtaagagatgattcaacttctagacactcatcaacaatcaaatgatgttctactcttagagatgtgggggacgggtggaatcggcaaaat |
4330372 |
T |
|
| Q |
243 |
caccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaag |
331 |
Q |
| |
|
|||| ||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4330373 |
caccattgcaaaggccatttataataaaattggccgcaattttgaaggtaggagctttcttgcaaatattagggaggtttgggagcaag |
4330461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 281
Target Start/End: Complemental strand, 4135858 - 4135624
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||| |||| || ||||||||||||||||||| ||||||||||||| |||| || || |||| |
|
|
| T |
4135858 |
ataggaacgaaagtgaggatatcaaggatattgttgaaaaagttacacatttgcttgacaagacagacctgttcattgctgaccatccagttagagtcga |
4135759 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
|||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||| |||| || || || ||||| || |
|
|
| T |
4135758 |
atctcgagtgctagatatgattcaactactggacactccattttcaaatgatgttctactactagggatgtggggtatggaaggtattggtaaaacaact |
4135659 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaa |
281 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||| |
|
|
| T |
4135658 |
attgcaaaatccgtttacaataaagttggttgcaa |
4135624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 188 - 314
Target Start/End: Original strand, 25567832 - 25567956
Alignment:
| Q |
188 |
aatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttga |
287 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||| || || || ||||||||| |||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
25567832 |
aatcaaaagatgttctacttctagggatgtggggtatgggagggattggcaaaaccaccattgcaaaagccatttacaataaaattgg--ccaattatga |
25567929 |
T |
|
| Q |
288 |
aggcaggagctttcttgcaaatattag |
314 |
Q |
| |
|
| | ||||||||| | ||||||||||| |
|
|
| T |
25567930 |
atgtaggagctttttggcaaatattag |
25567956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 327
Target Start/End: Original strand, 6713620 - 6713757
Alignment:
| Q |
190 |
tcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaag |
289 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||| ||||| || |||| ||||| ||| |||| ||||||||||| ||| |||||||| ||| ||||| | |
|
|
| T |
6713620 |
tcaaatgatgttttacttttagggatctggggaatggggggcttgggcaaaacaacccttgccaaagccatttataatcaaattggtatcaaatttgagg |
6713719 |
T |
|
| Q |
290 |
gcaggagctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
| |||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
6713720 |
gaaggagctttcttctaaacattagggaagtttgggag |
6713757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 6725745 - 6725876
Alignment:
| Q |
196 |
gatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcagga |
295 |
Q |
| |
|
|||||| |||| |||||||| ||||| ||||| || | ||| ||||| ||| |||| ||||||||||| ||| |||||||| |||| ||||| || |||| |
|
|
| T |
6725745 |
gatgttttacttctagggatttggggtatggggggtacgggtaaaacaacccttgccaaagccatttataatcaaattggtagcaaatttgagggaagga |
6725844 |
T |
|
| Q |
296 |
gctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
||||| || |||||| ||||| |||||||| |
|
|
| T |
6725845 |
gctttgttctaaatatcagggaattttgggag |
6725876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 25567613 - 25567737
Alignment:
| Q |
49 |
aggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgatt |
148 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| | | |||||||| ||||||||| ||||| | ||||| || |||| || ||| | || |
|
|
| T |
25567613 |
aggaatgaaagtgaggctatcaaggatattgttgaaaaaatcgtgcgtttgctagacaagacacacttgcttgttgctaataatccagtgggagttgaac |
25567712 |
T |
|
| Q |
149 |
ctcgagtgcaagatatgattcaact |
173 |
Q |
| |
|
|||||||| || ||||||||||||| |
|
|
| T |
25567713 |
ctcgagtggaaaatatgattcaact |
25567737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 303
Target Start/End: Original strand, 6813589 - 6813696
Alignment:
| Q |
196 |
gatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcagga |
295 |
Q |
| |
|
|||||| |||| |||||||| ||||| ||||| || ||||| ||||| ||| |||| ||||| ||||| ||| ||||||| |||| ||||| || |||| |
|
|
| T |
6813589 |
gatgttttacttctagggatatggggaatggggggtatgggtaaaacaacccttgccaaagcaatttataatcaaattgggagcaaatttgagggaagga |
6813688 |
T |
|
| Q |
296 |
gctttctt |
303 |
Q |
| |
|
|||||||| |
|
|
| T |
6813689 |
gctttctt |
6813696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 7888903 - 7888834
Alignment:
| Q |
204 |
actactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaatt |
273 |
Q |
| |
|
|||||||||||| ||||| ||||| || || |||||||| ||| |||| |||||| |||||||||||||| |
|
|
| T |
7888903 |
actactagggatatggggcatgggagggattgggaaaacaacccttgctaaagccgtttacaataaaatt |
7888834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 6590174 - 6590082
Alignment:
| Q |
211 |
gggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttctt |
303 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||| |||| ||||| ||||| ||| ||||||| |||| ||||| || |||||||||||| |
|
|
| T |
6590174 |
gggatatggggaatggggggtatggggaaaacaacccttgccaaagcaatttataatcaaattgggagcaaatttgagggaaggagctttctt |
6590082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 6672470 - 6672573
Alignment:
| Q |
196 |
gatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcagga |
295 |
Q |
| |
|
|||||| |||| |||||||| ||||| ||||| || ||||| || || | | |||| ||||||||||||||| ||||||| |||| ||||| || |||| |
|
|
| T |
6672470 |
gatgttttacttctagggatatggggaatggggggtatgggcaagacaaacattgccaaagccatttacaatcaaattgggagcaaatttgagggaagga |
6672569 |
T |
|
| Q |
296 |
gctt |
299 |
Q |
| |
|
|||| |
|
|
| T |
6672570 |
gctt |
6672573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 6750674 - 6750765
Alignment:
| Q |
208 |
ctagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctt |
299 |
Q |
| |
|
|||||||| ||||| ||||| || | ||| ||||| ||| |||| ||||||||||||||| ||||||| |||| ||||| || |||||||| |
|
|
| T |
6750674 |
ctagggatatggggaatggggggtacgggtaaaacaaccattgccaaagccatttacaatgaaattgggagcaaatttgagggaaggagctt |
6750765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 287
Target Start/End: Complemental strand, 6535797 - 6535713
Alignment:
| Q |
203 |
tactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttga |
287 |
Q |
| |
|
|||| |||||||| ||||| ||||| || || || ||||| ||| |||| ||||||||||| ||| |||||||| |||| ||||| |
|
|
| T |
6535797 |
tacttctagggatatggggaatggggggtataggcaaaacaaccattgccaaagccatttataatgaaattggtagcaagtttga |
6535713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 48 - 330
Target Start/End: Complemental strand, 5184265 - 5183983
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| || |||||| | ||||||||| ||||||||||| ||| ||||||| ||| |||| |
|
|
| T |
5184265 |
taggaatgaaagtgaggcaatcaaagacattgttgaaaatgttacacatttgctaggcaagacagatttgttcattgcggataatccggtgggagtcgaa |
5184166 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
|||||||| | |||| |||||||| | |||||| |||| |||||||| |||| ||||||||||||| ||||| ||||| || || || ||||| || |
|
|
| T |
5184165 |
tctcgagtacgagatgtgattcaattgctagacatccaacgatcaaatggtgttatactactagggatctggggtatgggaggtattggtaaaacaacgt |
5184066 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
| || ||| ||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5184065 |
tagccaaatccatttacaatgaaattggtcgcaattttgagggtaggagcttccttgcaaatattagggaagtttgggagcaa |
5183983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 330
Target Start/End: Complemental strand, 5105200 - 5104903
Alignment:
| Q |
39 |
tgttttgtataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtc |
138 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||||| | ||||| | | |||||||||||||||||| ||||| |||||| || ||||||| |
|
|
| T |
5105200 |
tgttttatgtaggaatgaaagtgaggttatcaaggatattgttaacaatgtaacgcatttgcttgacaagacagatttgtttattgctaataatccggtg |
5105101 |
T |
|
| Q |
139 |
ggaatcgattctcgagtgcaagatatgattcaacttatagac------actcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaa |
232 |
Q |
| |
|
||| | || |||||||| ||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
5105100 |
ggagttgaatctcgagttcaagatatgattcaactgctagaccaagatatccaacaatcaaatgatgttctcctactagggatgtggggtatgggaggag |
5105001 |
T |
|
| Q |
233 |
tggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
| || ||||| ||| |||| ||||| ||||||||||||||||| | |||||||| || || ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
5105000 |
ttggtaaaacaaccattgccaaagctatttacaataaaattggccataattttgatggtagaagcttccttgcaaatattagggaagtttgggagcaa |
5104903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 5368143 - 5368428
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||| ||| |||| | ||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||| |||| || ||| | || |
|
|
| T |
5368143 |
taggaatgaaagtaaggctatccaggatattgttgaaaatgttacgcgtaagcttgacaagacagaattgtttattgctgataatccagtgggagttgaa |
5368242 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttat------agacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaa |
241 |
Q |
| |
|
||||||||||||| |||||||||||| || ||| | |||||||||||||||||||| ||||| ||||||||||| ||||| ||| | || |||| |
|
|
| T |
5368243 |
tctcgagtgcaaggtatgattcaactaatggagcaagatatccaacaatcaaatgatgttcttctactggggatgtggggtatggggggagttggtaaaa |
5368342 |
T |
|
| Q |
242 |
ccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
| ||| |||| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5368343 |
caaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgggag |
5368428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 48 - 330
Target Start/End: Complemental strand, 5076044 - 5075762
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| | ||| | ||||| || |||||| || ||||||||||||||||||||| ||||||||||||||| |||| || ||| |||| |
|
|
| T |
5076044 |
taggaatgaaagtgaagcaatcgacgatatagtggaaaatatttcacgtttgcttgacaagacagatttgttcattgctgataatccagtgggagtcgaa |
5075945 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
|||||||| ||||||||||||||| || ||| |||||| | ||||| | ||||||||||||| ||||| |||||||| || || ||||||||| |
|
|
| T |
5075944 |
tctcgagtagaagatatgattcaacggttaaacatccaacaaaccaatgaaaatgtactactagggatttggggtatgggtgggattggtaaaaccacca |
5075845 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||| |||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
5075844 |
ttgcaaaagccatttacaataaaattggtcgtaaatttgcaggtaggagcttccttgcaaatatcagggaagtttgggagcaa |
5075762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 48 - 327
Target Start/End: Original strand, 5423436 - 5423721
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||||||||||| ||| ||||||||||||||| ||||| |||||| || |||| || ||| | || |
|
|
| T |
5423436 |
taggaatgaaagtgaggctattaaggatattgttgaaaatgttacgcgtaagcttgacaagacagatttgtttattgctaataatcctgtgggagttgaa |
5423535 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagac------actcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaa |
241 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | |||||||| || ||||||| ||||||||||||||||| ||||| ||| | || |||| |
|
|
| T |
5423536 |
tctcgagtgcaagatatgattcaactgctggaccaagatataaaacaatcagataatgttcttctactagggatgtggggtatggggggagttggtaaaa |
5423635 |
T |
|
| Q |
242 |
ccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
| ||| |||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5423636 |
caaccattgccaaagctatttacaataaaattggtcgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgggag |
5423721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 47 - 325
Target Start/End: Complemental strand, 5149276 - 5148998
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||| ||||||||| | |||| ||||||||||||| |||| | ||||| |||||||| ||||||||| ||||| || |||| |||||| | || |
|
|
| T |
5149276 |
ataggaacgaaagtgagatcatcaggaatattgttgaaaaagttactcacttgctagacaagaccgacttgttcgttgctcataatccagtcggagttga |
5149177 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||||| |||||||| ||||| ||||| || ||| ||||| |
|
|
| T |
5149176 |
aactcgagtacaagatatgattcaactgctagacatccaaaaatcaaatgatgtactattactaggaatgtggggtatggggggaattggcaaatccacc |
5149077 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttggg |
325 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||| | |||||||||||||||||||| |
|
|
| T |
5149076 |
attgcaaaagccatctacaataaaattggccgcaatttcgaaggtaggagttttctaggaaatattagggaggtttggg |
5148998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 5069390 - 5069106
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||| ||| |||||||||| |||||||||| |||||| || |||| || ||| | || |
|
|
| T |
5069390 |
taggaatgaaagtgatgttatagaggatattgttgaaaatgttacgcgtaagcttgacaaggcagacttgtttattgctaataatccagtgggagttgaa |
5069291 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagac------actcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaa |
241 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| | |||| ||||||||||||||| || |||||||||||||| ||||| ||| | || |||| |
|
|
| T |
5069290 |
tctcgagtgcaggatatgattcaactgctggaccaagatatccaactatcaaatgatgttctccttctagggatgtggggtatgggaggagttggtaaaa |
5069191 |
T |
|
| Q |
242 |
ccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttggga |
326 |
Q |
| |
|
| ||| |||| ||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
5069190 |
cgaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttggga |
5069106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 47 - 326
Target Start/End: Original strand, 5093729 - 5094008
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||||||| ||| | ||||||||| |||||||| ||||||||||||||| | || || ||| | | |
|
|
| T |
5093729 |
ataggaatgaaaataaggccatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataaacctgtgggagttgg |
5093828 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacc |
246 |
Q |
| |
|
|||||||||||||||| | ||| |||| |||||| ||||||||||||||||| || ||||| ||||||||||| ||||| || || || ||||| ||| |
|
|
| T |
5093829 |
ttctcgagtgcaagatgttattgaactgttagacatccaacaatcaaatgatgtactgctacttgggatgtggggtatgggggggattggtaaaacaacc |
5093928 |
T |
|
| Q |
247 |
gttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttggga |
326 |
Q |
| |
|
|||||||||| || || ||| ||||||| || ||||||||||| |||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
5093929 |
attgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgcaaatgttagggaagtttggga |
5094008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 5159814 - 5159536
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||| ||| | |||| ||||| |||||||||||||| ||| | ||||||||| |||||||| ||||||||||||||| |||| || ||| | | | |
|
|
| T |
5159814 |
taggaatcaaaataaggtcatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataatcctgtgggagttggt |
5159715 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
||||||||||||||| | ||| |||| |||||| ||||| || |||||||| || ||||| ||||||||||| ||||| || || || ||||| ||| |
|
|
| T |
5159714 |
tctcgagtgcaagatgttattgaactgctagacatccaacactccaatgatgtactgctacttgggatgtggggtatgggggggattggcaaaacaacca |
5159615 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttggga |
326 |
Q |
| |
|
|||||||||| || || ||| ||||||| || ||||||||||| |||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
5159614 |
ttgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgcaaatgttagggaagtttggga |
5159536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 5174555 - 5174837
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| | || || |||||||||| || ||| |||||| ||||||||||||||||||| |||||||| ||||||| ||| |||| |
|
|
| T |
5174555 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattgacaagacagacttgtttgttgctgataatccggtgggactcgaa |
5174654 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| ||||||||||||| ||||| || || || ||||| ||| |
|
|
| T |
5174655 |
tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactacct |
5174754 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
| || |||| |||| ||| ||||| ||||| ||||||||||| |||||||| || | ||||||||||| ||||||| |||| |
|
|
| T |
5174755 |
tagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaa |
5174837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 48 - 327
Target Start/End: Complemental strand, 5356935 - 5356650
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||| ||||| ||| |||||||||||||||||||||||| || ||||| || ||||||| ||| | || |
|
|
| T |
5356935 |
taggaatgaaagtgaagctatcaaggatattgttaaaaatattacacgtttgcttgacaagacagacttatttgttgctaataatccggtgggagttgaa |
5356836 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagac------actcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaa |
241 |
Q |
| |
|
||||| ||||||||||||||| | || |||| | |||||||||||||||||| | || |||||||||||||| ||||| ||| | || |||| |
|
|
| T |
5356835 |
tctcgtgtgcaagatatgattaagctgctagaacaagatatccaacaatcaaatgatgttttccttctagggatgtggggtatgggaggagttggcaaaa |
5356736 |
T |
|
| Q |
242 |
ccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggag |
327 |
Q |
| |
|
| ||| | | |||||| ||||||||||||||||| ||| ||||||| || || ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5356735 |
caaccatcggaaaagctatttacaataaaattggccgcgattttgatggtagaagcttccttgcaaatattagggaagtttgggag |
5356650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 5341376 - 5341665
Alignment:
| Q |
41 |
ttttgtataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcgg |
140 |
Q |
| |
|
|||| |||||||||||||| |||| |||||| ||||| || ||||| |||| || |||||| |||||||||||||||| ||| |||| |||| | || |
|
|
| T |
5341376 |
ttttttataggaatgaaagcgaggctatcaaggatatcgtcgaaaaagttacgcgcttgcttaacaagacagacttgtttgttgttgataatccagcggg |
5341475 |
T |
|
| Q |
141 |
aatcgattctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaa |
240 |
Q |
| |
|
| || || ||| ||||||||||||||||||| | || | ||||||||||||||| |||||||| ||||||||||||| ||||| ||||| || || |
|
|
| T |
5341476 |
ggttgaatcccgattgcaagatatgattcaactgcttgatatccaacaatcaaatgatattctactattagggatgtggggtatgggaggaattggtaag |
5341575 |
T |
|
| Q |
241 |
accaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
|| ||| ||| ||||||||||| |||||| |||| | ||| |||||||| ||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
5341576 |
actaccattgtgaaagccatttataataaacttggccacaactttgaaggtaggagtttccttgcaaatattagggaagtttgggagcaa |
5341665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 330
Target Start/End: Original strand, 5394732 - 5395014
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| | ||||| || |||||||||||| || ||||||||||||||| ||||||||||| |||||| ||||||| || || | || |
|
|
| T |
5394732 |
taggaatgaaagtgacgcaatcaatgacattgttgaaaatatttcacgtttgcttgacaaaacagacttgtttattgctaattatccagtgggcgtggaa |
5394831 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
||||| || | |||| ||||||| | |||||| || | | | ||||||||| ||||||||||||| ||||| ||||| || || || ||||||||| |
|
|
| T |
5394832 |
tctcgggtacgagatgtgattcagttgctagacatacagcgacccaatgatgttgtactactagggatatggggtatgggaggtattggtaaaaccacct |
5394931 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
| || |||||||| ||||| | |||||||||||||||||| || |||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
5394932 |
tagccaaagccatatacaacagaattggtcgcaattttgagggtaggagcttccttgcaaatattagggaagtgtgggagcaa |
5395014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 96 - 330
Target Start/End: Original strand, 5431144 - 5431378
Alignment:
| Q |
96 |
tttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgattctcgagtgcaagatatgattcaacttatagacactcaacaatcaaat |
195 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| | || || ||||| ||||||||| |||||||| | ||||||| |||||| |||||||||||| |
|
|
| T |
5431144 |
tttgcttgacaagaaagacatgttcattgctgataagccagtgggaattgattctcgaatgcaagatgttattcaacggctagacatccaacaatcaaat |
5431243 |
T |
|
| Q |
196 |
gatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcagga |
295 |
Q |
| |
|
| ||| ||||||| ||||||||||| ||||| ||||| || ||||| || |||||||||| ||||| ||| |||| || ||||| |||||||| |||| |
|
|
| T |
5431244 |
ggtgtaatactacttgggatgtggggtatggggggaatcggaaaaacaactattgcaaaagcaatttataatgaaatcggccgcaagtttgaagggagga |
5431343 |
T |
|
| Q |
296 |
gctttcttgcaaatattagggaggtttgggagcaa |
330 |
Q |
| |
|
| || ||||||||| ||||||| |||||||||||| |
|
|
| T |
5431344 |
gtttccttgcaaatgttagggaagtttgggagcaa |
5431378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 48 - 328
Target Start/End: Complemental strand, 5134218 - 5133938
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||||| |||||||||||||| | ||| ||||| |||||| || |||| || ||| | || |
|
|
| T |
5134218 |
taggaatgaaaatgaggctatcaaagat------gaaaatgttacgcgtttgcttgacaaaatagatttgtttattgctaataatccagtgggagttgaa |
5134125 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacac------tcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaa |
241 |
Q |
| |
|
||||| ||| ||||||||||||| | |||||| | ||||||||||||||||| |||| |||||||||||||| ||||| || | || |||| |
|
|
| T |
5134124 |
tctcgtatgctagatatgattcaattgctagacaaagatattgaacaatcaaatgatgttatacttctagggatgtggggtatgggaggcgttggtaaaa |
5134025 |
T |
|
| Q |
242 |
ccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagc |
328 |
Q |
| |
|
| ||| |||| ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
5134024 |
caaccattgcgaaagccatttacaataaaattggccgcgattttgaaggtaggagcttccttgcaaatattagggaagtttgggagc |
5133938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 184 - 324
Target Start/End: Complemental strand, 5692288 - 5692148
Alignment:
| Q |
184 |
caacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaatt |
283 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||| ||||| ||||| || ||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5692288 |
caacaatctaataatgttcgactaatagggatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatttacaataaaattggccgcaatt |
5692189 |
T |
|
| Q |
284 |
ttgaaggcaggagctttcttgcaaatattagggaggtttgg |
324 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
5692188 |
ttgaaggaaggagcttccttgcaaatataagggaagtttgg |
5692148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 184 - 326
Target Start/End: Original strand, 5348236 - 5348378
Alignment:
| Q |
184 |
caacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaatt |
283 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||| ||| | || ||||| ||| |||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
5348236 |
caacaatcaaatgatgttctcctactagggatgtggggtatgggaggagttggtaaaacgaccattgccaaagctatttacaataaaattggccgcaatt |
5348335 |
T |
|
| Q |
284 |
ttgaaggcaggagctttcttgcaaatattagggaggtttggga |
326 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
5348336 |
ttgaaggtagaagcttccttgcaaatattagggaagtttggga |
5348378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 48 - 317
Target Start/End: Original strand, 5444775 - 5445041
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||| || || || ||||||| |||| ||||||||||| ||||| || |||| || ||||| || |
|
|
| T |
5444775 |
taggaatgaaagtgaggatgtcaaaggtattgttgacaacatttcacatttgcttaacaaaacagacttgtttattgcgaataatccagtgggaattgaa |
5444874 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
||||||||| ||||| ||||||||| || ||| |||| |||| | ||||| ||| ||||||||||||| ||||| || || || ||||| || |
|
|
| T |
5444875 |
tctcgagtgaaagatgtgattcaacagctacacatccaac---caaagggggttctgctaatagggatgtggggcatgggggggatcggaaaaacaacaa |
5444971 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattaggga |
317 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5444972 |
ttgcaaaagccatttacaataagactggccgcaattttgaaggcaggagcttcctcgcaaatattaggga |
5445041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 5286297 - 5286167
Alignment:
| Q |
187 |
caatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttg |
286 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||| ||||| ||||| || ||||| ||| || ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5286297 |
caatcaaagggtgttcaactactagggatgtggggtatggggggaattggaaaaacaaccattacaaaagccatttacaataagattggccgcaattttg |
5286198 |
T |
|
| Q |
287 |
aaggcaggagctttcttgcaaatattaggga |
317 |
Q |
| |
|
| || |||||||| ||||||||||| ||||| |
|
|
| T |
5286197 |
atggtaggagcttccttgcaaatataaggga |
5286167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 48 - 331
Target Start/End: Original strand, 5276394 - 5276677
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
||||||||||||||| | || || |||||||||| || ||| | |||| ||||||||||| |||||| |||||||| |||| || ||| || | |
|
|
| T |
5276394 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcatgttttattgacaagacatgcttgtttgttgctgataatccagtgggactcaaa |
5276493 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccg |
247 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| |||||||| |||||||||||||| ||||||||||||| ||||| | || || ||||| ||| |
|
|
| T |
5276494 |
tctcgagtgcaagatatgattccattgctagacatccaacaatctaatgatgttctactggtagggatgtggggtatgggacgtattggtaaaactacct |
5276593 |
T |
|
| Q |
248 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttgcaaatattagggaggtttgggagcaag |
331 |
Q |
| |
|
| || |||| |||| ||| ||||| ||||| ||||||||||| |||||||| || | ||||||||||| ||||||| ||||| |
|
|
| T |
5276594 |
tagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaag |
5276677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 5262317 - 5262187
Alignment:
| Q |
187 |
caatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttg |
286 |
Q |
| |
|
|||||||| | ||||| |||| ||||||||||||| ||||| ||||| || ||||| ||| || | ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5262317 |
caatcaaagggtgttcaactattagggatgtggggtatggggggaattggcaaaacaaccattacgaaagccatttacaataagattggccgcaattttg |
5262218 |
T |
|
| Q |
287 |
aaggcaggagctttcttgcaaatattaggga |
317 |
Q |
| |
|
| || |||||||| ||||||||||| ||||| |
|
|
| T |
5262217 |
atggaaggagcttccttgcaaatataaggga |
5262187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 5692539 - 5692419
Alignment:
| Q |
47 |
ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcga |
146 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||||| |||| ||| | |||||||| ||||||| ||||||||| ||||| || || | || ||| | || |
|
|
| T |
5692539 |
ataggaacgaaagtgaggctataaaagatattgtcaaaaaagttgtgcgtttgctagacaagaaagacttgtttgttgctaatcattcagtgggagttga |
5692440 |
T |
|
| Q |
147 |
ttctcgagtgcaagatatgat |
167 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5692439 |
acctcgagtgcaagatatgat |
5692419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 5381492 - 5381603
Alignment:
| Q |
205 |
ctactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaaggcaggagctttcttg |
304 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | || ||||| ||| ||||||||||| ||||||| ||||| ||||||| || ||| |||| || |||| |
|
|
| T |
5381492 |
ctactagggatttggggtatgggggga-tcggtaaaacaaccattgcaaaagccgtttacaacaaaatctgtcgcaacttcagaggtaggactttccttg |
5381590 |
T |
|
| Q |
305 |
caaatattaggga |
317 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5381591 |
caaatattaggga |
5381603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 48 - 170
Target Start/End: Complemental strand, 48015618 - 48015496
Alignment:
| Q |
48 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgat |
147 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||| || || | || || || || |
|
|
| T |
48015618 |
taggaatgaaagcgaggttattaaagatattgttgaaaatattacacgattgcttgacaagacagacttgtttattgctaataattcagtggggattgaa |
48015519 |
T |
|
| Q |
148 |
tctcgagtgcaagatatgattca |
170 |
Q |
| |
|
||| |||||| |||||||||||| |
|
|
| T |
48015518 |
tcttgagtgcgagatatgattca |
48015496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 331
Target Start/End: Complemental strand, 22586487 - 22586345
Alignment:
| Q |
189 |
atcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaattggtcgcaattttgaa |
288 |
Q |
| |
|
|||||| | ||||| |||| ||||||||||||| ||||| ||| | || ||||| ||| |||||||||| |||||||||| ||||| ||| | |||||| |
|
|
| T |
22586487 |
atcaaacggtgttcaactagtagggatgtggggtatggggggatttggcaaaacaaccattgcaaaagctgtttacaataagattggccgcgagtttgaa |
22586388 |
T |
|
| Q |
289 |
ggcaggagctttcttgcaaatattagggaggtttgggagcaag |
331 |
Q |
| |
|
|| |||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
22586387 |
ggtaggagcttccttgcaaatattagggaagtttggaagcaag |
22586345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 284
Target Start/End: Complemental strand, 10952 - 10742
Alignment:
| Q |
74 |
atattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggaatcgattctcgagtgcaagatatgattcaact |
173 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||| ||| |||| ||||||| ||| || | ||||||||| | | | ||||| | |
|
|
| T |
10952 |
atattgttgaaaaagttactattttgcttgacaagacagacttattcgttgttgataatccggtgggagtcaaatctcgagtggacaaaacgattccgtt |
10853 |
T |
|
| Q |
174 |
tatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccaccgttgcaaaagccatttacaataaaatt |
273 |
Q |
| |
|
|| | | ||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| ||| |||||||||| |||||||| |||| |
|
|
| T |
10852 |
gctaaaaattcaacaatcaaatgatgttctgctactagggatttggggtatggggggaattggtaaaacaaccattgcaaaagcaatttacaaagaaatc |
10753 |
T |
|
| Q |
274 |
ggtcgcaattt |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
10752 |
tgtcgcaattt |
10742 |
T |
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