View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14283_high_20 (Length: 235)

Name: NF14283_high_20
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14283_high_20
NF14283_high_20
[»] chr5 (29 HSPs)
chr5 (1-167)||(26792580-26792747)
chr5 (1-160)||(10023908-10024068)
chr5 (1-160)||(8429859-8430019)
chr5 (1-160)||(30347764-30347924)
chr5 (1-160)||(24631084-24631245)
chr5 (1-153)||(27879869-27880023)
chr5 (1-103)||(43448315-43448417)
chr5 (1-77)||(4050667-4050743)
chr5 (1-77)||(30313243-30313319)
chr5 (1-77)||(25544027-25544103)
chr5 (27-160)||(37371689-37371824)
chr5 (1-63)||(3688820-3688882)
chr5 (1-63)||(3877903-3877965)
chr5 (13-74)||(14194166-14194227)
chr5 (1-69)||(37260185-37260254)
chr5 (13-77)||(15033873-15033937)
chr5 (13-77)||(43525174-43525238)
chr5 (13-74)||(17872194-17872255)
chr5 (13-74)||(26831498-26831559)
chr5 (17-77)||(6088079-6088139)
chr5 (13-77)||(18115668-18115732)
chr5 (1-49)||(39882072-39882120)
chr5 (17-74)||(2262289-2262346)
chr5 (100-160)||(3877974-3878035)
chr5 (100-160)||(43448217-43448278)
chr5 (100-160)||(14194305-14194367)
chr5 (100-160)||(3688750-3688811)
chr5 (100-160)||(4050543-4050604)
chr5 (119-160)||(30313155-30313196)
[»] chr3 (25 HSPs)
chr3 (1-167)||(10233582-10233749)
chr3 (1-167)||(10108748-10108915)
chr3 (1-167)||(10229987-10230154)
chr3 (1-160)||(27273181-27273341)
chr3 (1-160)||(31588-31747)
chr3 (1-103)||(23092377-23092479)
chr3 (1-81)||(15329850-15329930)
chr3 (1-103)||(41764650-41764752)
chr3 (1-77)||(10037503-10037579)
chr3 (1-103)||(11367480-11367582)
chr3 (1-77)||(11361117-11361193)
chr3 (13-77)||(9999279-9999343)
chr3 (13-77)||(10234291-10234355)
chr3 (13-77)||(37803048-37803112)
chr3 (13-74)||(10109472-10109533)
chr3 (17-77)||(47691897-47691957)
chr3 (13-77)||(10230699-10230762)
chr3 (15-71)||(10970196-10970252)
chr3 (13-77)||(10040934-10041000)
chr3 (13-74)||(41221070-41221131)
chr3 (17-74)||(50409033-50409090)
chr3 (100-160)||(10037379-10037440)
chr3 (100-160)||(10040809-10040869)
chr3 (100-137)||(10970330-10970367)
chr3 (100-153)||(23092284-23092339)
[»] chr2 (19 HSPs)
chr2 (1-153)||(36047978-36048131)
chr2 (1-160)||(26955206-26955366)
chr2 (1-160)||(28667460-28667621)
chr2 (1-160)||(37826294-37826455)
chr2 (1-160)||(39441953-39442112)
chr2 (1-103)||(24270234-24270336)
chr2 (1-150)||(41921457-41921607)
chr2 (1-103)||(21394199-21394301)
chr2 (167-235)||(5141262-5141330)
chr2 (13-74)||(24244735-24244796)
chr2 (13-77)||(35608759-35608823)
chr2 (19-74)||(17687649-17687704)
chr2 (4-74)||(40488976-40489047)
chr2 (17-74)||(2881771-2881828)
chr2 (13-74)||(3641932-3641993)
chr2 (17-74)||(27508245-27508302)
chr2 (100-160)||(21394099-21394161)
chr2 (100-160)||(3641795-3641857)
chr2 (100-153)||(24270373-24270427)
[»] scaffold0550 (1 HSPs)
scaffold0550 (1-160)||(4812-4972)
[»] chr7 (8 HSPs)
chr7 (1-160)||(42230931-42231091)
chr7 (1-153)||(7035488-7035641)
chr7 (1-160)||(12787266-12787426)
chr7 (1-110)||(9002405-9002516)
chr7 (1-77)||(45122636-45122712)
chr7 (4-77)||(21071339-21071413)
chr7 (13-74)||(5829829-5829890)
chr7 (13-74)||(22843403-22843464)
[»] chr6 (12 HSPs)
chr6 (1-160)||(31512775-31512935)
chr6 (1-160)||(29642637-29642797)
chr6 (1-103)||(24195736-24195838)
chr6 (1-77)||(12516248-12516324)
chr6 (1-77)||(15330399-15330475)
chr6 (13-74)||(10186417-10186478)
chr6 (17-74)||(4221304-4221361)
chr6 (13-74)||(30880927-30880988)
chr6 (13-73)||(12518480-12518540)
chr6 (100-153)||(12516130-12516184)
chr6 (14-76)||(14906360-14906422)
chr6 (100-160)||(15330276-15330337)
[»] scaffold0582 (1 HSPs)
scaffold0582 (1-160)||(10196-10356)
[»] chr4 (14 HSPs)
chr4 (10-160)||(6244698-6244849)
chr4 (1-160)||(55560251-55560410)
chr4 (1-160)||(49788112-49788273)
chr4 (1-103)||(31920304-31920406)
chr4 (1-108)||(35854737-35854843)
chr4 (1-81)||(49709033-49709113)
chr4 (1-103)||(786752-786852)
chr4 (1-56)||(38517436-38517491)
chr4 (13-74)||(37532700-37532761)
chr4 (13-77)||(618608-618672)
chr4 (89-160)||(38517365-38517437)
chr4 (89-160)||(1859474-1859545)
chr4 (1-49)||(1859565-1859613)
chr4 (100-160)||(37532836-37532897)
[»] chr1 (17 HSPs)
chr1 (1-160)||(52499507-52499668)
chr1 (1-160)||(18147465-18147625)
chr1 (1-152)||(36518723-36518875)
chr1 (1-160)||(6312275-6312435)
chr1 (1-108)||(37391428-37391534)
chr1 (1-103)||(16748948-16749050)
chr1 (1-77)||(25075138-25075214)
chr1 (1-77)||(16040885-16040961)
chr1 (1-74)||(48776610-48776683)
chr1 (13-77)||(28960934-28960998)
chr1 (13-77)||(2454046-2454110)
chr1 (13-77)||(7101831-7101895)
chr1 (13-77)||(48240083-48240147)
chr1 (13-74)||(36206082-36206143)
chr1 (13-77)||(16043225-16043289)
chr1 (40-74)||(12450841-12450875)
chr1 (100-152)||(16040771-16040823)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-160)||(50223-50383)
[»] chr8 (13 HSPs)
chr8 (1-160)||(25219852-25220012)
chr8 (4-153)||(7780533-7780678)
chr8 (4-153)||(7820623-7820768)
chr8 (1-160)||(30305922-30306079)
chr8 (1-81)||(14764486-14764566)
chr8 (6-103)||(21114963-21115061)
chr8 (1-103)||(37915320-37915422)
chr8 (1-81)||(31979807-31979887)
chr8 (13-74)||(13424496-13424557)
chr8 (13-74)||(14713145-14713206)
chr8 (1-57)||(33862668-33862724)
chr8 (100-160)||(14713008-14713069)
chr8 (103-160)||(31979949-31980007)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-160)||(29849-30012)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-168)||(13232-13400)
[»] scaffold0636 (1 HSPs)
scaffold0636 (1-124)||(45-168)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-81)||(133150-133230)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-81)||(310978-311058)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-77)||(10006-10082)
[»] scaffold0073 (4 HSPs)
scaffold0073 (1-77)||(23454-23530)
scaffold0073 (1-81)||(18315-18395)
scaffold0073 (100-160)||(23330-23391)
scaffold0073 (103-160)||(18195-18253)
[»] scaffold0003 (4 HSPs)
scaffold0003 (1-77)||(164387-164463)
scaffold0003 (1-77)||(172502-172578)
scaffold0003 (100-153)||(164270-164324)
scaffold0003 (100-153)||(172385-172439)
[»] scaffold0888 (1 HSPs)
scaffold0888 (13-77)||(1019-1083)
[»] scaffold0025 (1 HSPs)
scaffold0025 (13-77)||(13355-13419)
[»] scaffold0262 (1 HSPs)
scaffold0262 (4-77)||(17871-17945)
[»] scaffold0012 (2 HSPs)
scaffold0012 (13-74)||(98113-98174)
scaffold0012 (100-160)||(98249-98311)
[»] scaffold0134 (2 HSPs)
scaffold0134 (4-74)||(6517-6588)
scaffold0134 (100-160)||(6663-6724)
[»] scaffold0532 (1 HSPs)
scaffold0532 (13-74)||(3610-3671)
[»] scaffold1424 (1 HSPs)
scaffold1424 (4-74)||(551-622)
[»] scaffold0017 (1 HSPs)
scaffold0017 (4-74)||(185432-185503)
[»] scaffold0022 (1 HSPs)
scaffold0022 (13-74)||(125091-125152)
[»] scaffold1370 (1 HSPs)
scaffold1370 (13-77)||(1462-1528)
[»] scaffold0107 (1 HSPs)
scaffold0107 (13-77)||(44867-44933)
[»] scaffold0533 (1 HSPs)
scaffold0533 (89-160)||(11536-11609)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 26792747 - 26792580
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  26792747 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 26792648  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 167  Q
    |||||||||| ||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||    
T  26792647 aaaatctatacatttgatcaaaaaagattattatttccccgtgctggcacgggtcactatatactagt 26792580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10024068 - 10023908
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  10024068 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 10023969  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10023968 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 8429859 - 8430019
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||       ||||||||||||    
T  8429859 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatgaagatgatatttttttcatatcgaattt 8429958  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  8429959 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 8430019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 30347764 - 30347924
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  30347764 tacaagtataataatccaaatatttttatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 30347863  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| ||||| |  |||||||||||||||||||||||||| ||||||    
T  30347864 aaaatctatacatttgatcaaaaatgttttttatttccccgtgctggcacgggtcactata 30347924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 24631084 - 24631245
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  24631084 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 24631183  T
Q  101 aaaatctatatatttgat-aaaaaag-aattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| |||| || |||||||   |||||||||||||||||||||||||| ||||||    
T  24631184 aaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 24631245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 27880023 - 27879869
Alignment:
Q  1 tacaagtataataatccaaa-tatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatt 99  Q
    |||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||       |||||||||||    
T  27880023 tacaagtataataatccaaaatatttttatcgttatatggaatttttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaatt 27879924  T
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    ||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  27879923 taaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggt 27879869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43448417 - 43448315
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||       ||||||||||||    
T  43448417 tacaagtataataatccaaatatttttatcgttatatgcaatgtttaaatttttcaaaatatatacaaaattaagattatattgttttcatatcgaattt 43448318  T
Q  101 aaa 103  Q
    |||    
T  43448317 aaa 43448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4050743 - 4050667
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050743 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 4050667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30313319 - 30313243
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30313319 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 30313243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25544027 - 25544103
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25544027 tacaagtataataatccaaatacttttatcgttatatgcgatgtttagatatttcaaaatatatacaaaattaagat 25544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 37371824 - 37371689
Alignment:
Q  27 tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata-nnnnnnncatatcgaatttaaaatctatatatttgat-aaaaaa 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||| |||| || ||||||    
T  37371824 tatcattatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatattttttttcatatcgaatttaaaatctatacattttatcaaaaaa 37371725  T
Q  125 gaattttatttccccgtgctggcacgggttactata 160  Q
    |  |||||||| ||||||||||||||||| ||||||    
T  37371724 gttttttattttcccgtgctggcacgggtcactata 37371689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 3688882 - 3688820
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 63  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3688882 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3877903 - 3877965
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatata 63  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  3877903 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaattata 3877965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 14194166 - 14194227
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14194166 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14194227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37260254 - 37260185
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatat-ttcaaaatatatacaaa 69  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||    
T  37260254 tacaagtataataatccaaatacttttatcattatatgcaatgtttagatatatacaaaatatatacaaa 37260185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 15033873 - 15033937
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  15033873 aatccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatatattcaaaattaagat 15033937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 43525174 - 43525238
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  43525174 aatccaaatactttaatcattatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 43525238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 17872194 - 17872255
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  17872194 aatccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 17872255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 26831559 - 26831498
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26831559 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 26831498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 6088139 - 6088079
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  6088139 caaatactttaatcgttatgtgcaatgtttagatatttcaaactatatacaaaattaagat 6088079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 18115732 - 18115668
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| ||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  18115732 aatccaaatactttaatcattaagtgcaatgtttagatatttcaaaatatatacaaaattaagat 18115668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39882120 - 39882072
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttaga 49  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39882120 tacaagtataataatccatatatttttatcgttatatgcaatgtttaga 39882072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 2262289 - 2262346
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  2262289 caaatactttaatcgttatctgcaatgtttagatatttcaaaatatatataaaattaa 2262346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 3877974 - 3878035
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  3877974 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 3878035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 43448278 - 43448217
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||| || ||||||||||||||||||||||||| ||||||    
T  43448278 taaaatctatacatatgatcaaaaaaaaaatttatttccccgtgctggcacgggtcactata 43448217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 14194305 - 14194367
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 160  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  14194305 taaaatctatacatttgattaaaaaagttttttatttccccgtgcttggcacgggtcactata 14194367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 3688811 - 3688750
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  |||||||||||| ||||||||||||| ||||||    
T  3688811 taaaatctatacatatgatcaaaaaagttttttatttccccatgctggcacgggtcactata 3688750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 4050604 - 4050543
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  ||||||| |||||||||||||||||| ||||||    
T  4050604 taaaatctatacatatgatgaaaaaagttttttattcccccgtgctggcacgggtcactata 4050543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 30313196 - 30313155
Alignment:
Q  119 aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||  |||||||||||||||||||||||||| ||||||    
T  30313196 aaaaaagttttttatttccccgtgctggcacgggtcactata 30313155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10233749 - 10233582
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  10233749 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttcatatcgaattt 10233650  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 167  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||    
T  10233649 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatatactagt 10233582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10108915 - 10108748
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  10108915 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 10108816  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 167  Q
    |||||||||| ||||||| |||||||  ||||||||||| |||||||||||||| |||||||||||||    
T  10108815 aaaatctatacatttgatcaaaaaagttttttatttccctgtgctggcacgggtcactatatactagt 10108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10230154 - 10229987
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  10230154 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 10230055  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagt 167  Q
    |||||||||  ||||||| |||||||  |||||||||||||||||||||||||| |||||||||||||    
T  10230054 aaaatctatccatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactatatactagt 10229987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 27273341 - 27273181
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||||||||||    
T  27273341 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagatgatatttttttcatatcgaattt 27273242  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  ||||||||||||||||| |||||||| ||||||    
T  27273241 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctagcacgggtcactata 27273181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31747 - 31588
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||       ||||||||||||    
T  31747 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatt-agatgatatttttttcatatcgaattt 31649  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||| ||| ||||||    
T  31648 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacaggtcactata 31588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23092479 - 23092377
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||       ||||||||||||    
T  23092479 tacaagtataataatccaaatatttttatcgttatatgcagtgtttagatatttcaaaatatatacaaaaataagattatatatttttcatatcgaattt 23092380  T
Q  101 aaa 103  Q
    |||    
T  23092379 aaa 23092377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15329850 - 15329930
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15329850 tacaagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 15329930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41764650 - 41764752
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  41764650 tacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 41764749  T
Q  101 aaa 103  Q
    |||    
T  41764750 aaa 41764752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10037579 - 10037503
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10037579 tacaagtatagtaatccaaatacttttatcgttatatgcaatgtttggatatttcaaaatatatacaaaattaagat 10037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11367582 - 11367480
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  11367582 tacaagtataataatccaaataatttaatcgatatatgcaaagtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 11367483  T
Q  101 aaa 103  Q
    |||    
T  11367482 aaa 11367480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11361193 - 11361117
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  11361193 tacaaatataataatccaaatacttttatggttatatgcaatgtttagatatttcaaattatatacaaaattaagat 11361117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 9999343 - 9999279
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  9999343 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 9999279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 10234355 - 10234291
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  10234355 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 10234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 37803048 - 37803112
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  37803048 aatccaaatactttaatcgttatgtgcaatgtttagatatctcaaaatatatacaaaattaagat 37803112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 10109533 - 10109472
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  10109533 aatccaaatactttaatcgctatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10109472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 47691957 - 47691897
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  47691957 caaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagat 47691897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 10230762 - 10230699
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  10230762 aatccaaatactttaatcgctatgtgcaa-gtttagatatttcaaaatatatacaaaattaagat 10230699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 10970196 - 10970252
Alignment:
Q  15 tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaat 71  Q
    |||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||    
T  10970196 tccaaatactttaatcgttgtgtgcaatgtttagatatttcaaaatatatacaaaat 10970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 10041000 - 10040934
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttaga--tatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| ||| |||| |||||||||||||  ||||||||||||||||||||||||||||    
T  10041000 aatccaaatactttaatccttatgtgcaatgtttagacatatttcaaaatatatacaaaattaagat 10040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 41221131 - 41221070
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| ||  |||| |||||||||||| |||||||||||||||||||||||||    
T  41221131 aatccaaatactttaatatttatgtgcaatgtttaggtatttcaaaatatatacaaaattaa 41221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50409090 - 50409033
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  50409090 caaatactttaatcgttatgtgcaatgtttatatatttcaaaatatatacaatattaa 50409033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 10037440 - 10037379
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10037440 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10037379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 10040869 - 10040809
Alignment:
Q  100 taaaatctatatatttgataaaaaagaattttatttccccgtgc-tggcacgggttactata 160  Q
    ||||||||||| ||||||||||||||  |||||||| ||||||| |||||||||| ||||||    
T  10040869 taaaatctatacatttgataaaaaagttttttattt-cccgtgcttggcacgggtcactata 10040809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 10970330 - 10970367
Alignment:
Q  100 taaaatctatatatttgataaaaaagaattttatttcc 137  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  10970330 taaaatctatatatttgataaaaaagttttttatttcc 10970367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 23092339 - 23092284
Alignment:
Q  100 taaaatctatatatttgataaaaaagaatttt--atttccccgtgctggcacgggt 153  Q
    ||||||||||| || |||||||||| | ||||  ||||||||||||||||||||||    
T  23092339 taaaatctatacatatgataaaaaaaagttttttatttccccgtgctggcacgggt 23092284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 36047978 - 36048131
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  36047978 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 36048077  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    |||||||||| ||||||| |||||||  ||||||||||||||||||||||||||    
T  36048078 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggt 36048131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 26955206 - 26955366
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  26955206 tacaagtataataatctaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 26955305  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  26955306 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 26955366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 28667460 - 28667621
Alignment:
Q  1 tacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatt 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||||||||||    
T  28667460 tacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatatcgaatt 28667559  T
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  28667560 taaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 28667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 37826294 - 37826455
Alignment:
Q  1 tacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatt 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||||||||||    
T  37826294 tacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatatcgaatt 37826393  T
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  37826394 taaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 37826455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 39441953 - 39442112
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  39441953 tacaagtataatgatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 39442052  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||| ||||  |||||| |||||||  |||||||| ||||||||||||||||| ||||||    
T  39442053 aaaatttatacttttgatcaaaaaagttttttattt-cccgtgctggcacgggtcactata 39442112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24270234 - 24270336
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  24270234 tacaggtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatatatttttcatatcgaattt 24270333  T
Q  101 aaa 103  Q
    |||    
T  24270334 aaa 24270336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41921457 - 41921607
Alignment:
Q  1 tacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatt 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||||||||||    
T  41921457 tacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgata-ttttttcatatcgaatt 41921555  T
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacg 150  Q
    ||||||||||| |||| || |||||||  |||||||||||| ||||||||||    
T  41921556 taaaatctatacatttaatcaaaaaagttttttatttccccatgctggcacg 41921607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21394301 - 21394199
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||       ||||||||||||    
T  21394301 tacaagtataataatctaaatatttttatcgttatatgcagtgtttagatattttaaaatatatacaaaaataagattatatatttttcatatcgaattt 21394202  T
Q  101 aaa 103  Q
    |||    
T  21394201 aaa 21394199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 5141262 - 5141330
Alignment:
Q  167 tataggaaaagaaataacccaacttaaacatcgagccatcttcctctatcaatatcaattaatggaacc 235  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  5141262 tataggaaaagaaataacccaacttagacatcgagccatcttcatctaccaatatcaattaatggaacc 5141330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 24244796 - 24244735
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24244796 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 24244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 35608823 - 35608759
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35608823 aatccagatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 35608759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 17687649 - 17687704
Alignment:
Q  19 aatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17687649 aatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 17687704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 40488976 - 40489047
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    ||||||||||| || ||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  40488976 aagtataataaatctaaatactttaatcgttatgtgcaatgtttagatatttaaaaatatatacaaaattaa 40489047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 2881771 - 2881828
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||    
T  2881771 caaatactttaattgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 2881828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 3641993 - 3641932
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||| ||||| ||| |||||||| |||||||||| |||||||||||||||||||||||||||    
T  3641993 aatctaaatactttaatcgttatgtgcaatgtttggatatttcaaaatatatacaaaattaa 3641932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 27508302 - 27508245
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  27508302 caaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 27508245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 21394161 - 21394099
Alignment:
Q  100 taaaatctatatatttgataaaaaagaatttt--atttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||||||||| | ||||  |||||||||||||||||||||||| ||||    
T  21394161 taaaatctatacatatgataaaaaaaagttttttatttccccgtgctggcacgggttattata 21394099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 3641857 - 3641795
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 160  Q
    ||||||||||| |||| || ||||||| ||||||||||||||||| |||||||||| ||||||    
T  3641857 taaaatctatacatttaatcaaaaaagtattttatttccccgtgcttggcacgggtcactata 3641795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 24270373 - 24270427
Alignment:
Q  100 taaaatctatatatttgataaaaaa-gaattttatttccccgtgctggcacgggt 153  Q
    ||||||||||| || |||||||||| |  ||||||||||||||||||||||||||    
T  24270373 taaaatctatacatatgataaaaaaagttttttatttccccgtgctggcacgggt 24270427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 4812 - 4972
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||       ||||||||||||    
T  4812 tacaagtataataatccaaatatttttatcgttatatgcaatgttttgatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 4911  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  4912 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 4972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 42231091 - 42230931
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  42231091 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 42230992  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  42230991 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 42230931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 7035641 - 7035488
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  7035641 tacaagtataataatccaaatatttttatcgttatatgaaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 7035542  T
Q  101 aaaatctatatatttga-taaaaaagaattttatttccccgtgctggcacgggt 153  Q
    |||||||||| |||||| ||||||||  ||||||||||||||| | ||||||||    
T  7035541 aaaatctatacatttgattaaaaaagttttttatttccccgtgttagcacgggt 7035488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12787266 - 12787426
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||| |||||    
T  12787266 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcaaattt 12787365  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||| |  |||||||| ||||||    
T  12787366 aaaatctatacatttgatcaaaaaagttttttatttccccgtaccagcacgggtcactata 12787426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 9002405 - 9002516
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat--tatannnnnnncatatcgaat 98  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||       ||||||||||    
T  9002405 tacaagtataataattcaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatatttttttcatatcgaat 9002504  T
Q  99 ttaaaatctata 110  Q
    ||||||||||||    
T  9002505 ttaaaatctata 9002516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45122636 - 45122712
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45122636 tacaagtataataattcaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 45122712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 21071339 - 21071413
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    ||||||||||| |||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||||||||    
T  21071339 aagtataataaatccaaatactttaatcgttgtgtacaatgtttagatatttcaaaatatatacaaaattaagat 21071413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 5829829 - 5829890
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||| ||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  5829829 aatcaaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatttacaaaattaa 5829890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 22843464 - 22843403
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| |||  ||||||| ||||||||||||||||||  ||||||||||||||||||    
T  22843464 aatccaaatactttagtcgttatgtgcaatgtttagatatttttaaatatatacaaaattaa 22843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 31512775 - 31512935
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  31512775 tacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 31512874  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  31512875 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 31512935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 29642637 - 29642797
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  29642637 tacaagtataataatccaaatatttttatcgttgtatgcaacgtttagatatttcaaaatatatacaaaattaagatcatatttttttcatatcgaattt 29642736  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  29642737 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 29642797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24195838 - 24195736
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  24195838 tacaagtataataatcaaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatattgttttcatatcgaattt 24195739  T
Q  101 aaa 103  Q
    |||    
T  24195738 aaa 24195736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12516324 - 12516248
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12516324 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 12516248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 15330475 - 15330399
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15330475 tacaagtataataatccaaatacttttatcgttatatgcaatgtttaaatatttcaaaatatatacaaaattaagat 15330399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 10186478 - 10186417
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10186478 aatccaaatattttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 10186417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 4221304 - 4221361
Alignment:
Q  17 caaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  4221304 caaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 4221361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 30880988 - 30880927
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||    
T  30880988 aatccaaatactttaatcgttatatgcaatgtttagatatttttaaatatatacaaaattaa 30880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 12518540 - 12518480
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaatta 73  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||    
T  12518540 aatccaaatactttgatcgttatgtgcaatgtttagatatttcaaaatttatacaaaatta 12518480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 12516184 - 12516130
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  12516184 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 12516130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 14906422 - 14906360
Alignment:
Q  14 atccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaaga 76  Q
    ||||||||| ||| ||| |||| |||||| ||||||||||||||||||| |||| ||||||||    
T  14906422 atccaaatactttaatcattatgtgcaatatttagatatttcaaaatatttacagaattaaga 14906360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 15330337 - 15330276
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  15330337 taaaatctatacatatgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 15330276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10356 - 10196
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||        |||||||||||    
T  10356 tacaagtataataatccaaatatttttatcgttatatgcaacgtttagatatttcaaaatatatacaaaattaagatgatattttttttatatcgaattt 10257  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  10256 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 10196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 6244849 - 6244698
Alignment:
Q  10 aataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatttaaaatctat 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  6244849 aataatccaaatatttttatcgttgtatgcaatgtttagatatttcaaaatatatacaaaattaagattatatttttttcatatcgaatttaaaatctat 6244750  T
Q  110 atatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    | ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  6244749 acatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 6244698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 55560251 - 55560410
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  55560251 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 55560350  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||| ||| |||||| |||||||||| ||||||    
T  55560351 aaaatctatacatttgatcaaaaaagttttttgttt-cccgtgttggcacgggtcactata 55560410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 49788112 - 49788273
Alignment:
Q  1 tacaagtataataatccaaatatttt-tatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatt 99  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| |||       |||||||||||    
T  49788112 tacaagtataataatccaaatattttttatcgttatatgcaatgtttagatattttaaaatatatacaaaatgaagatgatatttttttcatatcgaatt 49788211  T
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| |||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  49788212 taaaatctatacatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 49788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 31920406 - 31920304
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  31920406 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 31920307  T
Q  101 aaa 103  Q
    |||    
T  31920306 aaa 31920304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35854843 - 35854737
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||||||||||    
T  35854843 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcatatcgaattt 35854745  T
Q  101 aaaatcta 108  Q
    ||||||||    
T  35854744 aaaatcta 35854737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49709113 - 49709033
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  49709113 tacaggtataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattaaaattata 49709033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 786852 - 786752
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||       ||||||||||||    
T  786852 tacaagtataataatccaaatacttttatcgttat--gcaatgtttagatatttcaaaatatatacaaagttaagatgatatttttttcatatcgaattt 786755  T
Q  101 aaa 103  Q
    |||    
T  786754 aaa 786752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38517491 - 38517436
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttca 56  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38517491 tacaagtataataatccagatatttttatcgttatatgcaatgtttagatatttca 38517436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 37532700 - 37532761
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  37532700 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 37532761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 618608 - 618672
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  618608 aatccaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaagat 618672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 38517437 - 38517365
Alignment:
Q  89 catatcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||| ||||||    
T  38517437 catatcgaatttaaaatctatacatttgatcaaaaaagatttttatttccccgtgctgacacgggtcactata 38517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 1859545 - 1859474
Alignment:
Q  89 catatcgaatttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||||||||||||||| ||| ||| |||||||  |||||||||||||||||||||||||| ||||||    
T  1859545 catatcgaatttaaaatctatacatt-gatcaaaaaagttttttatttccccgtgctggcacgggtcactata 1859474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1859613 - 1859565
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttaga 49  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  1859613 tacaagtataataatccaaatatttttatcgttatatacaatatttaga 1859565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 37532836 - 37532897
Alignment:
Q  100 taaaatctatatatttgataaaaa-agaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| ||||||| |||| ||  |||||||||||||||||||||||||| ||||||    
T  37532836 taaaatctatacatttgatcaaaacagttttttatttccccgtgctggcacgggtcactata 37532897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 52499668 - 52499507
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  52499668 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 52499569  T
Q  101 aaaatctatatatttgat-aaaaaag-aattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| |||| || |||||||   |||||||||||||||||||||||||| ||||||    
T  52499568 aaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 52499507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 18147625 - 18147465
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  18147625 tacaagtataataatccaaatatttttatcgctatgtgcaatgcttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 18147526  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||||||| || |||||||  |||||||||||||||||||||||||| ||||||    
T  18147525 aaaatctatatatttaatcaaaaaagttttttatttccccgtgctggcacgggtcactata 18147465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 36518875 - 36518723
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||       ||||||||||||    
T  36518875 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaaaatgatatttttttcatatcgaattt 36518776  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacggg 152  Q
    |||||||||| ||||||| |||||| |||||||||| |||||||| |||||||    
T  36518775 aaaatctatacatttgatcaaaaaaaaattttattttcccgtgctagcacggg 36518723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 6312275 - 6312435
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||        ||||||||||||    
T  6312275 tacaaatataataatccaaatatttttatcgttatatgcaatgtttagatattttaaaatatatacaaaattatgatgatttttttttcatatcgaattt 6312374  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  6312375 aaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 6312435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 37391428 - 37391534
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||       ||||||||||||    
T  37391428 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatata-aaaattaagatgatatttttttcatatcgaattt 37391526  T
Q  101 aaaatcta 108  Q
    ||||||||    
T  37391527 aaaatcta 37391534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16748948 - 16749050
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||    
T  16748948 tacaagtataataatccaaatatttttatcgttatattcaatgtttagatatttcaaaatatatacaaaattaaaattatatttttttcatatcgaattt 16749047  T
Q  101 aaa 103  Q
    |||    
T  16749048 aaa 16749050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25075138 - 25075214
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25075138 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 25075214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16040961 - 16040885
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16040961 tacaagtataataatccatatatttttatcgttatatgcaatgtttagatatttcaaaatatatataaaattaagat 16040885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 48776610 - 48776683
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    ||||||||||||||  |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  48776610 tacaagtataataaaacaaatactttaatcgatatatgcaatgtttagatatttcaaaatatatacaaaattaa 48776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 28960998 - 28960934
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28960998 aatccaaatactttaatcgttatttgcaatgtttagatatttcaaaatatatacaaaattaagat 28960934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 2454046 - 2454110
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  2454046 aatccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagat 2454110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 7101895 - 7101831
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  7101895 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaattatatacaaaattaagat 7101831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 48240083 - 48240147
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  48240083 aatccaaatagtttaatcgttatgtgcaatgtttatatatttcaaaatatatacaaaattaagat 48240147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 36206143 - 36206082
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  36206143 aatctaaatactttaatcattatatgcaatgtttagatatttcaaaatatatacaaaattaa 36206082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 16043289 - 16043225
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| ||||||| ||| ||||||||||||||| |||||||||||||    
T  16043289 aatccaaatactttgatcgttatgtgcaatggttacatatttcaaaatatagacaaaattaagat 16043225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 12450875 - 12450841
Alignment:
Q  40 aatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  12450875 aatgtttagatatttcaaaatatatacaaaattaa 12450841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 16040823 - 16040771
Alignment:
Q  100 taaaatctatatatttgataaaaaagaattttatttccccgtgctggcacggg 152  Q
    |||||||||||||| |||||||||||  ||||||||||||||||  |||||||    
T  16040823 taaaatctatatatatgataaaaaagttttttatttccccgtgccagcacggg 16040771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 50223 - 50383
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||       ||||||||||||    
T  50223 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaataaagatgatatttttttcatatcgaattt 50322  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||   ||||||| ||||||    
T  50323 aaaatctatacatttgatcaaaaaagatttttatttccccgtgccaacacgggtcactata 50383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 25219852 - 25220012
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  25219852 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 25219951  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||| ||||| |  ||||| ||||||||||| |||||||| ||||||    
T  25219952 aaaatctatacatttgatcaaaaatgttttttaattccccgtgctagcacgggtcactata 25220012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 7780678 - 7780533
Alignment:
Q  4 aagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatttaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||    
T  7780678 aagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaaa 7780584  T
Q  104 atctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    ||||| | ||||||| |||||| || |||||||||||||||||||||||||    
T  7780583 atctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggt 7780533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 7820768 - 7820623
Alignment:
Q  4 aagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaatttaaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||    
T  7820768 aagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgata-----ttcatatcgaatttaaa 7820674  T
Q  104 atctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    ||||| | ||||||| |||||| || |||||||||||||||||||||||||    
T  7820673 atctacacatttgatcaaaaaaaaaatttatttccccgtgctggcacgggt 7820623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 30306079 - 30305922
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  30306079 tacaagtataa-aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 30305981  T
Q  101 aaaatctatatatttgataaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    |||||||||| ||||||||||||| ||  |||||| || |||||||||| ||| ||||||    
T  30305980 aaaatctatacatttgataaaaaaaaaaattattt-cctgtgctggcacaggtcactata 30305922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14764566 - 14764486
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14764566 tacaagtataacaatccaaatacttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 14764486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 21114963 - 21115061
Alignment:
Q  6 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatac-aaaattaagattatannnnnnncatatcgaatttaaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||    
T  21114963 gtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaaattaagattatatatttttcatatcgaatttaaa 21115061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 37915320 - 37915422
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  37915320 tacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 37915419  T
Q  101 aaa 103  Q
    |||    
T  37915420 aaa 37915422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 31979807 - 31979887
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  31979807 tacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattata 31979887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 13424557 - 13424496
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  13424557 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 13424496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 14713206 - 14713145
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14713206 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 14713145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33862668 - 33862724
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaa 57  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  33862668 tacaagtataataatccaaatacttttatcgttatatacaatgtttagatatttcaa 33862724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 14713069 - 14713008
Alignment:
Q  100 taaaatctatatatttgataaaaa-agaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| ||||||| |||| ||  |||||||||||||||||||||||||| ||||||    
T  14713069 taaaatctatacatttgatcaaaatagttttttatttccccgtgctggcacgggtcactata 14713008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 31979949 - 31980007
Alignment:
Q  103 aatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| | || |||||||  |||||||||||||||||||||||||| ||||||    
T  31979949 aatctatatatataatcaaaaaagctttttatttccccgtgctggcacgggtcactata 31980007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 29849 - 30012
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttat---atgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaa 97  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||| |||       |||||||||    
T  29849 tacaagtataataatccaaatatttttatcattattatatgcaatgtttagatatttcaaaatatatacaaaattaagataatatttttttcatatcgaa 29948  T
Q  98 tttaaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||| ||||||    
T  29949 tttaaaatctatacatttgatcaaaaaagttttttatttccccgtgctggcacgggtcactata 30012  T

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Target: scaffold0472 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 13400 - 13232
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  13400 tacaagtataataatttaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 13301  T
Q  101 aaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactatatactagta 168  Q
    |||||||||| ||||||| |||||||  ||||||||||| ||||||  ||| || ||||||||||||||    
T  13300 aaaatctatacatttgatcaaaaaagttttttatttccctgtgctgaaacgagtcactatatactagta 13232  T

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Target: scaffold0636 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 45 - 168
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattatannnnnnncatatcgaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       ||||||||||||    
T  45 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagatgatatttttttcatatcgaattt 144  T
Q  101 aaaatctatatatttgataaaaaa 124  Q
    |||||||||| ||||||| |||||    
T  145 aaaatctatacatttgatcaaaaa 168  T

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Target: scaffold0029 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 133150 - 133230
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  133150 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 133230  T

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Target: scaffold0002 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 310978 - 311058
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  310978 tacatgtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 311058  T

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Target: scaffold0499 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10082 - 10006
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082 tacaagtataataatccaaatactttcatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 10006  T

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Target: scaffold0073 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23530 - 23454
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23530 tacaagtataataatccaaatacttttatcgttatatgcaatgtttatatatttcaaaatatatacaaaattaagat 23454  T

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Target: scaffold0073; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18395 - 18315
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagattata 81  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  18395 tacaagtataataatccaaatactttgatcgttatatgcaatgtttagctattttgaaatatatacaaaattaagattata 18315  T

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Target: scaffold0073; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 23391 - 23330
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| || |||| |||||||  |||||||||||||||||||||||||| ||||||    
T  23391 taaaatctatacatatgattaaaaaagttttttatttccccgtgctggcacgggtcactata 23330  T

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Target: scaffold0073; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 18253 - 18195
Alignment:
Q  103 aatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggttactata 160  Q
    ||||||||||| | || |||||||  |||||||||||||||||||||||||| ||||||    
T  18253 aatctatatatataatcaaaaaagctttttatttccccgtgctggcacgggtcactata 18195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 164463 - 164387
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  164463 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagat 164387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 172578 - 172502
Alignment:
Q  1 tacaagtataataatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  172578 tacaagtataataatccaaatacttttatcgttatatgcaatgtttagatattttaaattatatacaaaattaagat 172502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 164324 - 164270
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  164324 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 164270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 172439 - 172385
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgctggcacgggt 153  Q
    |||||||||||||| |||| |||||||  ||||||||||||||||||||||||||    
T  172439 taaaatctatatatatgatcaaaaaagttttttatttccccgtgctggcacgggt 172385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 1019 - 1083
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1019 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaagat 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 13419 - 13355
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13419 aatccaaatattttaatcgttacgtgcaatgtttagatatttcaaaatatatacaaaattaagat 13355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 17945 - 17871
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaagat 77  Q
    ||||||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  17945 aagtataataaatccaaatactttaatcgttatgtgcaatgtttaaatatttcaaaatatatacaaaattaagat 17871  T

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Target: scaffold0012 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 98113 - 98174
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  98113 aatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 98174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 98249 - 98311
Alignment:
Q  100 taaaatctatatatttgat-aaaaaagaattttatttccccgtgc-tggcacgggttactata 160  Q
    ||||||||||| ||||||| |||||||  |||||||||||||||| |||||||||| ||||||    
T  98249 taaaatctatacatttgatgaaaaaagttttttatttccccgtgcttggcacgggtcactata 98311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 6517 - 6588
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  6517 aagtataataaatccaaatactttaatcgttatgtgcaatgtttagatatttcaaaatatatataaaattaa 6588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 6663 - 6724
Alignment:
Q  100 taaaatctatatatttgataaaaaagaattttatttccccgtgc-tggcacgggttactata 160  Q
    ||||||||||| ||||||||||||||  |||||||||||||||| |||||||||| ||||||    
T  6663 taaaatctatacatttgataaaaaagttttttatttccccgtgcttggcacgggtcactata 6724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 3610 - 3671
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  3610 aatccaaagactttaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 3671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 622 - 551
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    ||||||||||| | |||||| ||  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  622 aagtataataaattcaaatacttcaatcgttatgtgcaatgtttagatatttcaaaatatatacaaaattaa 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 185503 - 185432
Alignment:
Q  4 aagtataataa-tccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    ||||||||||| | |||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  185503 aagtataataaatacaaatactttaatcgttatgtgcaatgtttagatattttaaaatatatacaaaattaa 185432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 125152 - 125091
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatatttcaaaatatatacaaaattaa 74  Q
    |||||||||| ||| |||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  125152 aatccaaatactttaatcgctatgtgcaatgtttagatattgcaaaatatatacaaaattaa 125091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1370 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 1462 - 1528
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  1462 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagat 1528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 44933 - 44867
Alignment:
Q  13 aatccaaatatttttatcgttatatgcaatgtttagatat--ttcaaaatatatacaaaattaagat 77  Q
    |||||||||| ||| ||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  44933 aatccaaatactttaatctttatgtgcaatgtttagatatatttcaaaatatatacaaaattaagat 44867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 11609 - 11536
Alignment:
Q  89 catatcgaatttaaaatctatatatttgat-aaaaaagaatttt-atttccccgtgctggcacgggttactata 160  Q
    |||||||||||||||||||||| |||| || |||||||  |||| |||||||||||||||||||||| ||||||    
T  11609 catatcgaatttaaaatctatacatttaatcaaaaaagtttttttatttccccgtgctggcacgggtcactata 11536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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