View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14283_high_3 (Length: 544)

Name: NF14283_high_3
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14283_high_3
NF14283_high_3
[»] chr8 (8 HSPs)
chr8 (11-305)||(39044150-39044444)
chr8 (375-496)||(39043949-39044069)
chr8 (389-497)||(9631557-9631665)
chr8 (410-487)||(22957122-22957198)
chr8 (407-527)||(38847730-38847852)
chr8 (392-438)||(22957235-22957281)
chr8 (442-487)||(2713451-2713496)
chr8 (407-487)||(2834470-2834548)
[»] chr7 (3 HSPs)
chr7 (389-527)||(37925536-37925672)
chr7 (442-527)||(46178773-46178855)
chr7 (457-487)||(42429312-42429342)
[»] chr5 (2 HSPs)
chr5 (388-527)||(5476523-5476661)
chr5 (458-527)||(39691695-39691762)
[»] chr4 (2 HSPs)
chr4 (390-527)||(12627070-12627207)
chr4 (428-525)||(759114-759207)
[»] chr3 (8 HSPs)
chr3 (388-527)||(45160411-45160549)
chr3 (421-513)||(24497989-24498079)
chr3 (133-259)||(43834413-43834539)
chr3 (389-437)||(24498093-24498141)
chr3 (388-438)||(8332435-8332485)
chr3 (429-525)||(36987448-36987540)
chr3 (429-525)||(37012887-37012979)
chr3 (393-426)||(41902945-41902978)
[»] chr1 (4 HSPs)
chr1 (389-525)||(1426950-1427084)
chr1 (406-487)||(26272581-26272665)
chr1 (389-427)||(51467927-51467965)
chr1 (389-437)||(49227047-49227095)
[»] scaffold0024 (2 HSPs)
scaffold0024 (407-527)||(70368-70485)
scaffold0024 (389-438)||(70320-70369)
[»] chr2 (3 HSPs)
chr2 (458-527)||(21201843-21201910)
chr2 (466-527)||(21202048-21202107)
chr2 (408-527)||(41758989-41759106)
[»] chr6 (2 HSPs)
chr6 (414-487)||(14713612-14713685)
chr6 (442-527)||(30437965-30438048)
[»] scaffold0638 (1 HSPs)
scaffold0638 (464-527)||(7797-7858)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 39044444 - 39044150
Alignment:
Q  11 tagcatagggattccggcgaagttgacgccggatgttacagtgtgtaagggagggaagaatggttgttataagacggtgcaagaagctgttaatgctgcg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  39044444 tagcgtagggattccggcgaagttgacgccggatgttacagtgtgtaagggaggggagaagggttgttataagacggtgcaagaagctgttaatgctgcg 39044345  T
Q  111 ccggataacggcgttgacgggaagagatttgtcatatatatcaaagaaggggtttatgaggaaaccgttagggttccgttggagaagagaaatgtggtgt 210  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39044344 ccggataacggcgttgacaggaagaggtttgtcatatatatcaaagaaggggtttatgaggaaaccgttagggttccgttggagaagagaaatgtggtgt 39044245  T
Q  211 ttttaggtgatggaatcgggaagacggttattaccggttctgctaatgtgggccagcccggaatgactacttacaactctgccaccgtaggtaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39044244 ttttaggtgatggaatcgggaagacggttattaccggttctgctaatgtgggccagcccggaatgactacttacaactctgccaccgtaggtaac 39044150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 375 - 496
Target Start/End: Complemental strand, 39044069 - 39043949
Alignment:
Q  375 gagtgattgtttgagagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataatt 474  Q
    ||||||||| || |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  39044069 gagtgattgatt-agagaaagtcttgcataggcacaaatataaatgaaaaatggttagacacacatgtataaattgatacagttaaaagaaaaaataatt 39043971  T
Q  475 gaatgatgtgacttgatatttt 496  Q
    |||||||| |||||||| ||||    
T  39043970 gaatgatgagacttgatttttt 39043949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 497
Target Start/End: Original strand, 9631557 - 9631665
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagtt-aaaagaaaaaataattgaatgatgtgact 487  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  9631557 gagaaagtcttacataggcacaaatacaaatgaaaaatgcttaggcacacatacataaatt-ataaagttaaaaagagaaaataattaaatgatgtgact 9631655  T
Q  488 tgatattttt 497  Q
    |||| |||||    
T  9631656 tgatgttttt 9631665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 22957122 - 22957198
Alignment:
Q  410 aaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgact 487  Q
    |||||||||| |||| |||||||||||||   |||||||| ||||| |||||||| ||||||| ||||||||||||||    
T  22957122 aaatacaaataaaaagtggttagacacactcacataaattaataaaattaaaagagaaaataa-tgaatgatgtgact 22957198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 527
Target Start/End: Original strand, 38847730 - 38847852
Alignment:
Q  407 cacaaatacaaatgaaaaatggttagacaca--catgcataaattgataaag-ttaaaagaaaaaataattgaatgatgtgacttgatattttttctcat 503  Q
    ||||||||||||| ||| ||||||||||| |  |||  ||||||| | |||  |||||||||||| ||||| ||||||||||||| || |||||||||||    
T  38847730 cacaaatacaaataaaatatggttagacataaacatatataaattaaaaaaaattaaaagaaaaagtaattaaatgatgtgacttaat-ttttttctcat 38847828  T
Q  504 ttattgttctccgtttatgtgagt 527  Q
     ||||  ||| | |||||||||||    
T  38847829 ctatttgtctacatttatgtgagt 38847852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 438
Target Start/End: Complemental strand, 22957281 - 22957235
Alignment:
Q  392 aaagtcttacatagacacaaatacaaatgaaaaatggttagacacac 438  Q
    |||||||| |||||||||||||| |||||||||||| || |||||||    
T  22957281 aaagtcttgcatagacacaaatagaaatgaaaaatgtttggacacac 22957235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 487
Target Start/End: Complemental strand, 2713496 - 2713451
Alignment:
Q  442 cataaattgataaagttaaaagaaaaaataattgaatgatgtgact 487  Q
    |||||||||| ||| |||||| ||||||||||| ||||||||||||    
T  2713496 cataaattgaaaaaattaaaaaaaaaaataattaaatgatgtgact 2713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 487
Target Start/End: Complemental strand, 2834548 - 2834470
Alignment:
Q  407 cacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgact 487  Q
    |||||| | |||| ||| ||||||||||||||||  ||||||||| ||| |||||  | ||| ||||||||||||||||||    
T  2834548 cacaaacataaataaaatatggttagacacacat--ataaattgaaaaaattaaagaagaaagtaattgaatgatgtgact 2834470  T

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Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 389 - 527
Target Start/End: Complemental strand, 37925672 - 37925536
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgactt 488  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  37925672 gagaaagtcttacataggcacaaatacaaatgaaaaatggttaggcacacatatataaattgataaagttaaaagagaaaataattgaatgatgtgactt 37925573  T
Q  489 gatattttttctcatttattgttctccgtttatgtgagt 527  Q
    |  || |||||||||||||| |||||| |||||||||||    
T  37925572 g--atgttttctcatttatttttctccatttatgtgagt 37925536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 527
Target Start/End: Complemental strand, 46178855 - 46178773
Alignment:
Q  442 cataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    |||||||||||||| |||||||| ||||||||||||| || |||||    ||||||||||||||||| |||||  |||||||||||    
T  46178855 cataaattgataaaattaaaagagaaaataattgaattatatgact---gattttttctcatttatttttctctatttatgtgagt 46178773  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 487
Target Start/End: Original strand, 42429312 - 42429342
Alignment:
Q  457 ttaaaagaaaaaataattgaatgatgtgact 487  Q
    |||||||||||||||||||||||||||||||    
T  42429312 ttaaaagaaaaaataattgaatgatgtgact 42429342  T

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Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 388 - 527
Target Start/End: Original strand, 5476523 - 5476661
Alignment:
Q  388 agagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgact 487  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5476523 agagaaagttttacataggcacaaatacaaatgaaaaatggttaaacacacatacataaattgataaagttaaaagagaaaataattgaatgatgtgact 5476622  T
Q  488 tgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    |||| |||||| ||||||||| |||||| || ||||||||    
T  5476623 tgat-ttttttttcatttatttttctccattcatgtgagt 5476661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 39691695 - 39691762
Alignment:
Q  458 taaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    ||||||| |||||||||| |||||||||||  |||||| |||||||||||| | |||  |||||||||||    
T  39691695 taaaagagaaaataattgcatgatgtgact--atatttattctcatttattttactcaatttatgtgagt 39691762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 390 - 527
Target Start/End: Original strand, 12627070 - 12627207
Alignment:
Q  390 agaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaag--aaaaaataattgaatgatgtgact 487  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  12627070 agaaagtcttacatagacacaaatacaaatgaaaaatggttggacacatatacataaattgataaagttaaaagaaaaaaaataattgaatgatgtgact 12627169  T
Q  488 tgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    ||  ||||||||||||||||| |||||| || ||||||||    
T  12627170 tg--attttttctcatttatttttctccattcatgtgagt 12627207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 525
Target Start/End: Complemental strand, 759207 - 759114
Alignment:
Q  428 gttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtga 525  Q
    ||||||||||||  |||||||||| ||| |||||| | ||||||||||||||||||||  | | ||| ||||| ||||||| |||| | |||||||||    
T  759207 gttagacacaca--cataaattgaaaaaattaaaaaagaaaataattgaatgatgtga--ttaaattctttcttatttatttttctacatttatgtga 759114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 388 - 527
Target Start/End: Complemental strand, 45160549 - 45160411
Alignment:
Q  388 agagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaa-ttgataaagttaaaagaaaaaataattgaatgatgtgac 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  45160549 agagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatacataaatttgataaagttaaaagagaaaataattgaatgatatgac 45160450  T
Q  487 ttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    |||  ||||||| ||||||||| |||||| || ||||||||    
T  45160449 ttg--attttttatcatttatttttctccattcatgtgagt 45160411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 421 - 513
Target Start/End: Original strand, 24497989 - 24498079
Alignment:
Q  421 aaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttct 513  Q
    |||| |||||||||||||||  ||||||| ||||| |||||||| |||||||||||||||| |||||  | |||| |||||||||||| ||||    
T  24497989 aaaagtggttagacacacatatataaattaataaaattaaaagagaaaataattgaatgatctgact--aaatttattctcatttatttttct 24498079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 43834539 - 43834413
Alignment:
Q  133 agagatttgtcatatatatcaaagaaggggtttatgaggaaaccgttagggttccgttggagaagagaaatgtggtgtttttaggtgatggaatcgggaa 232  Q
    |||||||||| ||| |||| || |||||||||||||| || |  ||||||||||||||   |||||| ||||| ||| |||| |||||||| || || ||    
T  43834539 agagatttgtgatacatataaaggaaggggtttatgaagagagggttagggttccgttaaggaagaggaatgttgtgcttttgggtgatggcattggtaa 43834440  T
Q  233 gacggttattaccggttctgctaatgt 259  Q
    ||| |||||||| || ||| |||||||    
T  43834439 gactgttattactggctcttctaatgt 43834413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Complemental strand, 24498141 - 24498093
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacaca 437  Q
    ||||||||||| |||| |||||||||||||||||||||| || ||||||    
T  24498141 gagaaagtcttgcataaacacaaatacaaatgaaaaatgtttggacaca 24498093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 438
Target Start/End: Original strand, 8332435 - 8332485
Alignment:
Q  388 agagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacac 438  Q
    |||| ||||||| |||||||||||||| |||||||||||| |||| |||||    
T  8332435 agagcaagtcttgcatagacacaaatataaatgaaaaatgtttaggcacac 8332485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 36987448 - 36987540
Alignment:
Q  429 ttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtga 525  Q
    |||||||||||  |||||||||| ||| |||||| | ||||||||||||||||||||  | | ||| ||||| ||||||| |||| | |||||||||    
T  36987448 ttagacacaca--cataaattgaaaaaattaaaaaagaaaataattgaatgatgtga--ttaaattatttcttatttatttttctacatttatgtga 36987540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 37012887 - 37012979
Alignment:
Q  429 ttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtga 525  Q
    |||||||||||  |||||||||| ||| |||||| | ||||||||||||||||||||  | | ||| ||||| ||||||| |||| | |||||||||    
T  37012887 ttagacacaca--cataaattgaaaaaattaaaaaagaaaataattgaatgatgtga--ttaaattatttcttatttatttttctacatttatgtga 37012979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Complemental strand, 41902978 - 41902945
Alignment:
Q  393 aagtcttacatagacacaaatacaaatgaaaaat 426  Q
    |||||||||||||||||| |||||||||||||||    
T  41902978 aagtcttacatagacacatatacaaatgaaaaat 41902945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 389 - 525
Target Start/End: Original strand, 1426950 - 1427084
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgactt 488  Q
    |||||| |||||||||||||||||||||||| |||||| ||||| |||| || |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  1426950 gagaaaatcttacatagacacaaatacaaataaaaaattgttaggcacatatacataaattgataaaattaaaagaaaaaataattgaatgatatgactt 1427049  T
Q  489 gatattttttctcatttattgttctccgtttatgtga 525  Q
       | ||||||||||||||| |||||| |||||||||    
T  1427050 --aactttttctcatttatttttctccatttatgtga 1427084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 487
Target Start/End: Original strand, 26272581 - 26272665
Alignment:
Q  406 acacaaatacaaatgaaaaatggttagacacacatgcataaattgataaag---ttaaaagaaaaaataattgaatgatgtgact 487  Q
    ||||||| |||||| ||||||| |||| ||||||| ||||||| || |||    |||||||| ||||||||||||||||||||||    
T  26272581 acacaaacacaaataaaaaatgattaggcacacatacataaatagaaaaaaaaattaaaagagaaaataattgaatgatgtgact 26272665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 51467927 - 51467965
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatg 427  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  51467927 gagaaagtcttacatagacacaaatataaatgagaaatg 51467965  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 49227047 - 49227095
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacaca 437  Q
    |||||||||||||| || |||||||||||||  |||||| |||||||||    
T  49227047 gagaaagtcttacaaaggcacaaatacaaatataaaatgtttagacaca 49227095  T

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Target: scaffold0024 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 407 - 527
Target Start/End: Complemental strand, 70485 - 70368
Alignment:
Q  407 cacaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcattta 506  Q
    |||||| |||||| |||| ||||||||||| ||  |||||||||||||| |||||||| ||||||||||||| ||| ||||  || ||||||||||||||    
T  70485 cacaaacacaaataaaaagtggttagacacgca--cataaattgataaaattaaaagagaaaataattgaataatgcgactaaat-ttttttctcattta 70389  T
Q  507 ttgttctccgtttatgtgagt 527  Q
    || || ||| || ||||||||    
T  70388 tttttttccattcatgtgagt 70368  T

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Target: scaffold0024; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 70320 - 70369
Alignment:
Q  389 gagaaagtcttacatagacacaaatacaaatgaaaaatggttagacacac 438  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  70320 gagaaagtcttacatagacacaaatacaaatgaaaaatgcttaggcacac 70369  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 458 - 527
Target Start/End: Complemental strand, 21201910 - 21201843
Alignment:
Q  458 taaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    |||| |||||||||||||||||||||||||  | ||||||||||||||||| |||||| || ||||||||    
T  21201910 taaatgaaaaaataattgaatgatgtgact--aaattttttctcatttatttttctcctttgatgtgagt 21201843  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 527
Target Start/End: Original strand, 21202048 - 21202107
Alignment:
Q  466 aaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    ||||||||||||||||||||||  | ||||||| ||||||||| |||||| || ||||||||    
T  21202048 aaaataattgaatgatgtgact--aaattttttgtcatttatttttctcctttgatgtgagt 21202107  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 527
Target Start/End: Complemental strand, 41759106 - 41758989
Alignment:
Q  408 acaaatacaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttat 507  Q
    |||||||||||| |||||   ||||||| | || |||||||  | ||| |||||||| |||||| ||| ||||||| |||  | ||||||||| ||||||    
T  41759106 acaaatacaaataaaaaagatttagacatatattcataaatgaaaaaatttaaaagagaaaatatttgtatgatgttact--aaattttttcttatttat 41759009  T
Q  508 tgttctccgtttatgtgagt 527  Q
    | |||||  |||||||||||    
T  41759008 ttttctcaatttatgtgagt 41758989  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 487
Target Start/End: Complemental strand, 14713685 - 14713612
Alignment:
Q  414 acaaatgaaaaatggttagacacacatgcataaattgataaagttaaaagaaaaaataattgaatgatgtgact 487  Q
    |||||| ||| ||||||| | |||||  |||||||||| ||| |||||||||||||||||| ||||| ||||||    
T  14713685 acaaataaaatatggttaaatacacacacataaattgaaaaaattaaaagaaaaaataattaaatgaagtgact 14713612  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 527
Target Start/End: Original strand, 30437965 - 30438048
Alignment:
Q  442 cataaattgataaagttaaaagaaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    ||||| |||| ||| |||||||| |||||||| |||||||||||||  | ||| ||| ||||||||| |||| | |||||||||||    
T  30437965 cataagttgaaaaaattaaaagagaaaataatcgaatgatgtgact--aaattctttttcatttatttttcttcatttatgtgagt 30438048  T

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Target: scaffold0638 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 464 - 527
Target Start/End: Original strand, 7797 - 7858
Alignment:
Q  464 aaaaaataattgaatgatgtgacttgatattttttctcatttattgttctccgtttatgtgagt 527  Q
    ||||||||||||||||||||||||  | ||| ||||||||||||| ||| || |||||||||||    
T  7797 aaaaaataattgaatgatgtgact--aaattctttctcatttatttttcgccatttatgtgagt 7858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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