View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14283_low_15 (Length: 306)

Name: NF14283_low_15
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14283_low_15
NF14283_low_15
[»] chr1 (1 HSPs)
chr1 (15-306)||(47799604-47799895)
[»] chr7 (3 HSPs)
chr7 (57-252)||(1528249-1528444)
chr7 (76-144)||(20276780-20276848)
chr7 (132-226)||(4683126-4683220)
[»] chr2 (4 HSPs)
chr2 (132-268)||(31481859-31481995)
chr2 (132-226)||(31332149-31332243)
chr2 (132-226)||(31338879-31338973)
chr2 (15-132)||(31481720-31481837)
[»] chr6 (1 HSPs)
chr6 (132-203)||(30824885-30824956)
[»] chr3 (1 HSPs)
chr3 (132-226)||(7404127-7404221)
[»] chr8 (3 HSPs)
chr8 (132-267)||(27813789-27813923)
chr8 (132-226)||(25640939-25641033)
chr8 (15-140)||(4742898-4743023)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 306
Target Start/End: Complemental strand, 47799895 - 47799604
Alignment:
Q  15 atcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799895 atcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgt 47799796  T
Q  115 gaccggcttctgcaccattcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattc 214  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  47799795 gactggcttctgcaccattcaaccctaagttttcaataatttagttaagtttgaatctagaaattgcatataatcgcattccgaacaaaaacttctattc 47799696  T
Q  215 gttttgcagaattcaaagacctttaacaagcaaaggtgcaggacgatcacattagtcgaatccaaaaattggttgaagcatttgatcaaaca 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799695 gttttgcagaattcaaagacctttaacaagcaaaggttcaggacgatcacattagtcgaatccaaaaattggttgaagcatttgatcaaaca 47799604  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 252
Target Start/End: Complemental strand, 1528444 - 1528249
Alignment:
Q  57 acaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgtgaccggcttctgcaccattcaaccctaagtttccaataattt 156  Q
    |||| |||||||||||||||||||||||| ||| |||| ||||| ||||||||||||| |  ||||||| ||||||||||||||||||||| || |||||    
T  1528444 acagccaccattgtcggtgctggagcagcagtattttgattatgaacaacaggaacgtaaaaggcttctacaccattcaaccctaagtttctaacaattt 1528345  T
Q  157 agttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaattcaaagacctttaacaagcaaaggtg 252  Q
    |||||||   ||||||| ||||| || ||||| |||||| || |||| | || ||||||||||||| ||| |||| || || ||| ||||||||||    
T  1528344 agttaagaccgaatctataaattacacataattgcattctgaacaaacaattatattcgttttgcataatccaaacactttcaacgagcaaaggtg 1528249  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 20276848 - 20276780
Alignment:
Q  76 ctggagcagccgtagtttggttatgcacaacaggaacgtgaccggcttctgcaccattcaaccctaagt 144  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  20276848 ctggagcagcagtagtttggtcatgcaaaacaggaacgtgaccggcttctgcaccattcaaccctaagt 20276780  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 4683220 - 4683126
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaat 226  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || |||||||||||||||  ||| | |||| ||| |||||||||||    
T  4683220 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaagaaacaattctgttcattttgcagaat 4683126  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 268
Target Start/End: Original strand, 31481859 - 31481995
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaattcaaa 231  Q
    ||||||||||||||||||| |||||||||||| | |||||||||| || || ||||||||||||| | |||| | | | |||||||||||||||| ||||    
T  31481859 ttcaaccctaagtttccaacaatttagttaagatcgaatctagaattttcagataatcgcattccaaacaaacaatgccattcgttttgcagaatccaaa 31481958  T
Q  232 gacctttaacaagcaaaggtgcaggacgatcacatta 268  Q
      | ||||||||||| ||| |||| |  |||||||||    
T  31481959 tgcatttaacaagcataggggcagaagaatcacatta 31481995  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 31332243 - 31332149
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaat 226  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || ||||||||||||||| |||| | |||| ||| |||||||||||    
T  31332243 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 31332149  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 31338973 - 31338879
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaat 226  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || ||||||||||||||| |||| | |||| ||| |||||||||||    
T  31338973 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 31338879  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 31481720 - 31481837
Alignment:
Q  15 atcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgt 114  Q
    ||||||||||||||  ||||||||  ||||||||||||||||| || ||||| || |||  ||||||||||  || ||||||| ||||  |  ||||| |    
T  31481720 atcagcctccgaccaatgtacacaatcgtcctctcctctccgagagccaccactgccggcactggagcagcaatattttggttctgcatgatgggaacct 31481819  T
Q  115 gaccggcttctgcaccat 132  Q
    || ||||||||| |||||    
T  31481820 gatcggcttctgtaccat 31481837  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 30824885 - 30824956
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaa 203  Q
    ||||||||||||||||||| |||||||||||| | ||||||| || || || ||||||||||||||| ||||    
T  30824885 ttcaaccctaagtttccaacaatttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaa 30824956  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 7404221 - 7404127
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaat 226  Q
    ||||| ||||||||||||| | |||||||||| | ||||||| || || || ||||||||||||||| |||| | |||| ||| |||||||||||    
T  7404221 ttcaatcctaagtttccaacattttagttaagatcgaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 7404127  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 27813789 - 27813923
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaattcaaa 231  Q
    ||||||||||||||||||| |||||||||||| | ||||||| || || || |||||||||||| || |||| |  ||  |||||||||||||||  |||    
T  27813789 ttcaaccctaagtttccaacaatttagttaagatcgaatcta-aatttacacataatcgcattctgaacaaacaaatccgttcgttttgcagaatcgaaa 27813887  T
Q  232 gacctttaacaagcaaaggtgcaggacgatcacatt 267  Q
     || |||||  |||| || |||||||  ||||||||    
T  27813888 cacatttaaagagcatagatgcaggagaatcacatt 27813923  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 25640939 - 25641033
Alignment:
Q  132 ttcaaccctaagtttccaataatttagttaagtttgaatctagaaattgcatataatcgcattccgagcaaaaacttctattcgttttgcagaat 226  Q
    ||||| ||||||||||||| | |||||||||| |  |||||| || || || ||||||||||||||| |||| | |||| ||| |||||||||||    
T  25640939 ttcaatcctaagtttccaacattttagttaagatctaatctaaaatttacacataatcgcattccgaacaaacaattctgttcattttgcagaat 25641033  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 4742898 - 4743023
Alignment:
Q  15 atcagcctccgaccggtgtacacatgcgtcctctcctctccgacaggcaccattgtcggtgctggagcagccgtagtttggttatgcacaacaggaacgt 114  Q
    ||||||||||||||  ||||||||  ||||||||||||||| |  | ||||| ||| |  |||||||||||   ||||||||| ||||| || ||||| |    
T  4742898 atcagcctccgaccaatgtacacagacgtcctctcctctccaaatgccaccactgttgaagctggagcagcaacagtttggttctgcacgacgggaacat 4742997  T
Q  115 gaccggcttctgcaccattcaaccct 140  Q
    ||  ||||||| ||| || |||||||    
T  4742998 gattggcttcttcactatccaaccct 4743023  T

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