View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14283_low_6 (Length: 534)
Name: NF14283_low_6
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14283_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 4 - 516
Target Start/End: Original strand, 37678296 - 37678808
Alignment:
| Q |
4 |
cacctatgaaagttcaaatacttgtatgcttttgttgcatgcataaatcacctattttggtttcttaaacaatgaagaccctgtcaattattgcctcaat |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37678296 |
cacctatgaaagttcaaatacttgtatgcttttgttgcatgcataaatcacttattttggtttcttaaacaatgaagaccctgtcaattattgcctcact |
37678395 |
T |
|
| Q |
104 |
tagagtatggtgaatttcattggtcatgtaggattggaagacagagagatacaaagatataatcaagtctggctctgtacgtatatttcctctcctaata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37678396 |
tagagtatggtgaatttcattggtcatgtaggattggaagacagagagatacaaagatataatcaagtctggctctgtacgtatatttcctctcctaata |
37678495 |
T |
|
| Q |
204 |
ttccacattcctgaattgtgaaggtggtatttttgttgataagctaacacatattaattaaattaccttcgcattttggcacaggtaaaacctagaccag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37678496 |
ttccacattcctgaattgtgaaggtggtatttttgttgataagctaacacataataattaaattaccttcgcattctggcacaggtaaaacctagaccag |
37678595 |
T |
|
| Q |
304 |
gagttttgaaattgatggatgacgccagagacgctgtacgattatttaccggttatatacttttgtaatgttttgatctatattttttgttttgttgcac |
403 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37678596 |
gagttttgaaattgatggatgaagccagagacgctgtacgattatttaccggttatatacttttgtaatgttttgatctatattttttgttttgttgcac |
37678695 |
T |
|
| Q |
404 |
gaagtataaccttgtttaccgttatacttgattggtttggttcggaacttatcattttttgctcaattgctgatgcaggggaaaaagctagctgtttgct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37678696 |
gaagtataaccttgtttaccgttatacttgattggtttggttcggaacttatcattttttgctcaattgctgatgcaggggaaaaagctagctgtttgct |
37678795 |
T |
|
| Q |
504 |
ctgctgcaactaa |
516 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37678796 |
ctgctgcaactaa |
37678808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 37677635 - 37677675
Alignment:
| Q |
75 |
atgaagaccctgtcaattattgcctcaattagagtatggtg |
115 |
Q |
| |
|
|||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
37677635 |
atgatgaccctgtcaattgttgcctcacttagagtatggtg |
37677675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University