View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14283_low_7 (Length: 529)
Name: NF14283_low_7
Description: NF14283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14283_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Complemental strand, 36806392 - 36805893
Alignment:
| Q |
18 |
tctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcattgcaaagtactcgaattgcaatgaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36806392 |
tctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcattgcaaagtactcgaattgcaatgaaat |
36806293 |
T |
|
| Q |
118 |
acaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaatacaaaaaattaatcaacctataaagcacggatacgg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||| ||||||| |
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| T |
36806292 |
acaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaataaaaaaaattagtca-cctatgaagcacagatacgg |
36806194 |
T |
|
| Q |
218 |
acacatacaccaga-acagaaatggtcaagaaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaatatgcatattt |
316 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36806193 |
acacagacaccagacacagaaatggtcaagaaagtacccaatcatgacaagaaagcatgaaatgatcagctccataacttctattccaatatgcatattt |
36806094 |
T |
|
| Q |
317 |
gtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgttcaaggatcataacaacacta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36806093 |
gtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgttcaaggatcataacaacacta |
36805994 |
T |
|
| Q |
417 |
aatggaagaaagtaggcatgagcttcatttggattacgagtccgaaacaaagtattgttttccaataagttgataaatattccctccattgaatatatat |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36805993 |
aatggaagaaagtaggcatgagcttcatttggattacgagtccgaaacaaagtattgttttccaataagttgataaatattccctccattgaatatatat |
36805894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 36514835 - 36515333
Alignment:
| Q |
18 |
tctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcattgcaaagtactcgaattgcaatgaaat |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36514835 |
tctcctgataccaaattgatttcaggaaatgatgcatctttctttggattgaaatgctctgagatatttgcattgcaaagtactcgaattgcaatgaaat |
36514934 |
T |
|
| Q |
118 |
acaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaatacaaaaaattaatcaacctataaagcacggatacgg |
217 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||| ||||| ||| |||||| ||||||| |
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| T |
36514935 |
acaattccttcacgtaccatgttgcccttggtccctatgcacaaaatcatttttcatgaaaaata-aaaatattagtcaac-tatgaagcacagatacgg |
36515032 |
T |
|
| Q |
218 |
acacatacaccaga-acagaaatggtcaagaaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaatatgcatattt |
316 |
Q |
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||||| |||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36515033 |
acacagacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatattt |
36515132 |
T |
|
| Q |
317 |
gtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgttcaaggatcataacaacacta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36515133 |
gtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaagagatgctcaaggatcataacaacacta |
36515232 |
T |
|
| Q |
417 |
aatggaagaaagtaggcatgagcttcatttggattacgagtccgaaacaaagtattgttttccaataagttgataaatattccctccattgaatatatat |
516 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36515233 |
aatggaagaaagtagacatgagcttcatttggattctgagtccgaaacaaagtattgttttccaataagttgataaatattccctccattgaatatatat |
36515332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 41756757 - 41756718
Alignment:
| Q |
251 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
290 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||| |
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| T |
41756757 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
41756718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 41764699 - 41764634
Alignment:
| Q |
251 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaatatgcatattt |
316 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| |||||||||| ||||| |||||||| | |||||| |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatattt |
41764634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 26973807 - 26973871
Alignment:
| Q |
252 |
acccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaatatgcatattt |
316 |
Q |
| |
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||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||| |
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| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattt |
26973871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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