View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14284_high_2 (Length: 380)
Name: NF14284_high_2
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14284_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 21429426 - 21429082
Alignment:
| Q |
19 |
cctgtccttagattagatattgcaacaaaaatttcattgtaaaatctctagataagttttgttagctattttaaagtaattacattggtcaaaattttgg |
118 |
Q |
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| T |
21429426 |
cctgtccttagattagatattgcaacaaaaatttcattgtaaa-tctctagataagttttgttagctattttaaatcaattacattggtcaaaattttgg |
21429328 |
T |
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| Q |
119 |
tttgcccaaataaatgtgttaaaaaactattctaaaaaaggataaatgttcgttcggcccaaataaatgtggtcacagagattcagacgaaggttgtgtt |
218 |
Q |
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| T |
21429327 |
tttgcccaaataaatgtgttaaaaaactattctaaaaaaggataaatgttcgttcggcccaaataaatgtggtcacagagattcagacgaaggttgtgtt |
21429228 |
T |
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| Q |
219 |
tcatatgttcctcccaattgctcccgagggtaggaacttcattatccttgtcctgattcacctcttcttctatgtcagtctaatcttggtacacatactg |
318 |
Q |
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| T |
21429227 |
tcatatgttcctcccaattgctcccgagggtaggaacttcattatccttgtcctgattcacctcttcttctatgtcagtctaatcttggtacacatactg |
21429128 |
T |
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| Q |
319 |
tttctcttcactcaagaatctgttacatcaaaatccaaacataagc |
364 |
Q |
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| T |
21429127 |
tttctcttcactcaagaatctgttacatcaaaatccaaacataagc |
21429082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 195 - 359
Target Start/End: Original strand, 30286909 - 30287073
Alignment:
| Q |
195 |
agagattcagacgaaggttgtgtttcatatgttcctcccaattgctccc--gagggtaggaacttcattatccttgtcctgattcacctcttcttctatg |
292 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30286909 |
agagattcagatgaaggttgtgtttcatatgttcctcccaattgctcccctgagcgttggaacttcattgtccttgtcctgattcacctcttcttctatg |
30287008 |
T |
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| Q |
293 |
tcagtctaatcttggtacacatactgtttctcttcactcaagaatctgttacatcaaaatccaaaca |
359 |
Q |
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| T |
30287009 |
tcagtctaatcttgct-ctcatactg-ttatctacaatcaagaatctgttacatcaaaattcaaaca |
30287073 |
T |
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