View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14284_high_3 (Length: 237)
Name: NF14284_high_3
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14284_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44016628 - 44016406
Alignment:
| Q |
1 |
actatgtgagagaagcatatgctagatggaatgagttggaggaaattgatgaaattttgaatgacaatgttgctttgttaactcaaggtatattctaata |
100 |
Q |
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| T |
44016628 |
actatgtgagagaagcatatgctagatggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatattctaata |
44016529 |
T |
|
| Q |
101 |
atcaattacatgtgctacttc--tatgtgactatgaacaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttg |
198 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016528 |
atcaattacatgttctacttctatatgtgactatgaacaatccaattaaaattcagcgtgacataataaattcagttatatgaatttgatttgttttttg |
44016429 |
T |
|
| Q |
199 |
aatctcactctacaggtggaacc |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
44016428 |
aatctcactctacaggtggaacc |
44016406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44029951 - 44030056
Alignment:
| Q |
1 |
actatgtgagagaagcatatgctagatggaatgagttggaggaaattgatgaaattttgaatgacaatgttgctttgttaactcaaggtatattctaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
44029951 |
actatgtgagagaagcatatgctagatggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgttaactcaaggtatgttcaaata |
44030050 |
T |
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| Q |
101 |
atcaat |
106 |
Q |
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|||||| |
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| T |
44030051 |
atcaat |
44030056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 31241304 - 31241226
Alignment:
| Q |
26 |
atggaatgagttggaggaaattgatgaaattttgaatgacaatgttgctttgttaactcaaggtatattctaataatca |
104 |
Q |
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|||| ||||||||||||||||||||| |||| ||||| || ||||||||||||| |||||||| ||| | |||||| |
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| T |
31241304 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtattttcaattaatca |
31241226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 31232334 - 31232269
Alignment:
| Q |
26 |
atggaatgagttggaggaaattgatgaaattttgaatgacaatgttgctttgttaactcaaggtat |
91 |
Q |
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|||| ||||||||||||||||||||| |||| ||||| || ||||||||||||| |||||||| |
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| T |
31232334 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgttaacccaaggtat |
31232269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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