View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14284_low_1 (Length: 551)

Name: NF14284_low_1
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14284_low_1
NF14284_low_1
[»] chr7 (20 HSPs)
chr7 (188-488)||(307469-307769)
chr7 (15-101)||(307296-307382)
chr7 (489-535)||(30786480-30786526)
chr7 (481-534)||(48403298-48403351)
chr7 (487-535)||(45763311-45763359)
chr7 (488-535)||(43032906-43032953)
chr7 (494-534)||(35610509-35610549)
chr7 (489-535)||(43624239-43624285)
chr7 (498-534)||(17465807-17465843)
chr7 (498-534)||(17587371-17587407)
chr7 (485-535)||(618818-618868)
chr7 (494-534)||(10098211-10098251)
chr7 (498-534)||(15074322-15074358)
chr7 (498-534)||(42508121-42508157)
chr7 (487-534)||(40141320-40141367)
chr7 (489-534)||(9365580-9365625)
chr7 (498-534)||(10098276-10098312)
chr7 (494-534)||(20564012-20564052)
chr7 (498-534)||(20566453-20566489)
chr7 (498-534)||(41880457-41880493)
[»] chr2 (19 HSPs)
chr2 (487-535)||(10624559-10624607)
chr2 (488-535)||(213546-213593)
chr2 (488-535)||(5334509-5334556)
chr2 (488-535)||(18003366-18003413)
chr2 (489-535)||(41559975-41560021)
chr2 (494-535)||(38945701-38945742)
chr2 (489-534)||(43978470-43978515)
chr2 (494-534)||(17420507-17420547)
chr2 (494-534)||(39793902-39793942)
chr2 (494-534)||(39800746-39800786)
chr2 (494-534)||(42505856-42505896)
chr2 (489-534)||(3940823-3940868)
chr2 (494-534)||(3935769-3935809)
chr2 (498-534)||(15831070-15831106)
chr2 (498-534)||(30497043-30497079)
chr2 (494-534)||(42499692-42499732)
chr2 (498-534)||(43539831-43539867)
chr2 (489-527)||(43984435-43984473)
chr2 (498-534)||(17426492-17426528)
[»] scaffold0260 (1 HSPs)
scaffold0260 (488-535)||(11713-11760)
[»] chr8 (16 HSPs)
chr8 (488-535)||(32379015-32379062)
chr8 (488-535)||(32432970-32433017)
chr8 (490-535)||(30305637-30305682)
chr8 (489-535)||(7340000-7340046)
chr8 (487-535)||(8423883-8423931)
chr8 (494-534)||(26659393-26659433)
chr8 (494-534)||(489720-489760)
chr8 (494-534)||(1052497-1052537)
chr8 (494-534)||(42485632-42485672)
chr8 (489-534)||(22510482-22510527)
chr8 (498-534)||(25628-25664)
chr8 (494-534)||(184646-184686)
chr8 (498-534)||(2416146-2416182)
chr8 (498-534)||(23022381-23022417)
chr8 (494-534)||(36678023-36678063)
chr8 (488-534)||(17924034-17924080)
[»] chr1 (14 HSPs)
chr1 (488-535)||(20349390-20349437)
chr1 (488-535)||(38776220-38776267)
chr1 (489-535)||(3983020-3983066)
chr1 (489-535)||(31945955-31946001)
chr1 (494-534)||(3732447-3732487)
chr1 (494-534)||(19924694-19924734)
chr1 (498-534)||(26879389-26879425)
chr1 (489-535)||(3948496-3948544)
chr1 (482-534)||(3993937-3993989)
chr1 (494-534)||(13629343-13629383)
chr1 (494-534)||(26875632-26875672)
chr1 (498-534)||(30890004-30890040)
chr1 (497-534)||(8473725-8473762)
chr1 (498-534)||(38633247-38633283)
[»] chr6 (5 HSPs)
chr6 (489-535)||(1612841-1612887)
chr6 (484-534)||(27616644-27616694)
chr6 (494-534)||(11694154-11694194)
chr6 (494-534)||(30829745-30829785)
chr6 (498-534)||(11688057-11688093)
[»] chr5 (9 HSPs)
chr5 (489-535)||(14279783-14279829)
chr5 (494-534)||(19041211-19041251)
chr5 (494-527)||(11033563-11033596)
chr5 (498-534)||(11027038-11027074)
chr5 (498-534)||(28241893-28241929)
chr5 (498-534)||(28886487-28886523)
chr5 (498-534)||(38860262-38860298)
chr5 (494-534)||(19035144-19035184)
chr5 (498-534)||(37820941-37820977)
[»] chr3 (20 HSPs)
chr3 (489-535)||(3948662-3948708)
chr3 (489-535)||(8161063-8161109)
chr3 (489-535)||(30947747-30947793)
chr3 (494-534)||(42904276-42904316)
chr3 (494-534)||(2968019-2968059)
chr3 (494-534)||(34045347-34045387)
chr3 (494-534)||(46388897-46388937)
chr3 (494-534)||(50481477-50481517)
chr3 (489-535)||(6740839-6740885)
chr3 (489-534)||(54392122-54392167)
chr3 (494-534)||(1835089-1835129)
chr3 (494-534)||(16444547-16444587)
chr3 (498-534)||(29008829-29008865)
chr3 (494-534)||(34051440-34051480)
chr3 (494-534)||(46702119-46702159)
chr3 (494-534)||(49144550-49144590)
chr3 (485-527)||(49138511-49138553)
chr3 (486-534)||(3953309-3953357)
chr3 (494-534)||(46406718-46406758)
chr3 (494-534)||(54386072-54386112)
[»] chr4 (20 HSPs)
chr4 (483-535)||(49566543-49566595)
chr4 (494-534)||(1087799-1087839)
chr4 (494-534)||(9893358-9893398)
chr4 (494-534)||(31421645-31421685)
chr4 (494-534)||(49090386-49090426)
chr4 (485-534)||(52529143-52529192)
chr4 (498-534)||(1089678-1089714)
chr4 (498-534)||(6181885-6181921)
chr4 (498-534)||(13173177-13173213)
chr4 (498-534)||(13182192-13182228)
chr4 (494-534)||(30726835-30726875)
chr4 (494-534)||(41801031-41801071)
chr4 (494-534)||(54634109-54634149)
chr4 (489-534)||(6175781-6175826)
chr4 (494-534)||(1309208-1309248)
chr4 (494-534)||(26932523-26932563)
chr4 (494-534)||(37563374-37563414)
chr4 (498-534)||(40352309-40352345)
chr4 (494-534)||(41793270-41793310)
chr4 (494-534)||(49096445-49096485)
[»] scaffold0101 (1 HSPs)
scaffold0101 (494-534)||(41150-41190)
[»] scaffold0744 (1 HSPs)
scaffold0744 (498-534)||(516-552)
[»] scaffold0014 (1 HSPs)
scaffold0014 (494-534)||(84486-84526)
[»] scaffold0293 (1 HSPs)
scaffold0293 (498-527)||(823-852)
[»] scaffold1606 (1 HSPs)
scaffold1606 (498-534)||(55-91)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 188 - 488
Target Start/End: Original strand, 307469 - 307769
Alignment:
Q  188 cactttacaaacatgagaggagtgcttcatatacattatttcatattatttacaacaattaaaggtgataaagactaacaatatacatacctcgatgaag 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307469 cactttacaaacatgagaggagtgcttcatatacattatttcatattatttacaacaattaaaggtgataaagactaacaatatacatacctcgatgaag 307568  T
Q  288 aagacatcaaactccaacttttaagttcaacaaaccagattccccagctaacagcttctaaatcatattatagaagacatatcatataacttaagacaaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307569 aagacatcaaactccaacttttaagttcaacaaaccagattccccagctaacagcttctaaatcatattatagaagacatatcatataacttaagacaaa 307668  T
Q  388 ccataaatacagttcaactgcaacacaaaatacagatataaccatttaaaggtaattatagctaataaattctgtaactgtatattcattcaattattta 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307669 ccataaatacagttcaactgcaacacaaaatacagatataaccatttaaaggtaattatagctaataaattctgtaactgtatattcattcaattattta 307768  T
Q  488 t 488  Q
    |    
T  307769 t 307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 307296 - 307382
Alignment:
Q  15 gatctattgtgtcgctgcattaagtcagtcagttgtcaatttttaataacgaaccctactgaattatatagctttcacttatcatgc 101  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307296 gatctattgtgtcactgcattaagtcagtcagttgtcaatttttaataacgaaccctactgaattatatagctttcacttatcatgc 307382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 30786480 - 30786526
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30786480 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 30786526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 534
Target Start/End: Original strand, 48403298 - 48403351
Alignment:
Q  481 ttatttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48403298 ttatttaagagtattgctgttcccacatatagtatggctgtgccacaccagtaa 48403351  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 487 - 535
Target Start/End: Original strand, 45763311 - 45763359
Alignment:
Q  487 atgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45763311 atgagatttgctgttcccacatatagtatggctgtgccacaccagtaat 45763359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 43032906 - 43032953
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43032906 tgagttttgctgttcccacatatagtatggctgtgccacaccaataat 43032953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 35610549 - 35610509
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35610549 ttgctgttcccacatatagtatggctgtgccacaccagtaa 35610509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 43624285 - 43624239
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||    
T  43624285 gagttttgttgttcccacatatagtatggttgtgccacaccagtaat 43624239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 17465843 - 17465807
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||    
T  17465843 tgttcccacatatagtatggctgtgccacaccagtaa 17465807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 17587371 - 17587407
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||    
T  17587371 tgttcccacatatagtatggctgtgccacaccagtaa 17587407  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 535
Target Start/End: Complemental strand, 618868 - 618818
Alignment:
Q  485 ttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||  ||||| ||||||||||||||||||||||||||||| ||||||    
T  618868 ttatgagaattgctcttcccacatatagtatggctgtgccacacgagtaat 618818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 10098251 - 10098211
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  10098251 ttgctgttcccacatatggtatggctgtgccacacgagtaa 10098211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 15074358 - 15074322
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15074358 tgttcccacatatagtatggctgtgccacacgagtaa 15074322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 42508157 - 42508121
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  42508157 tgttcccacatatagtatggctgtgccacacgagtaa 42508121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 534
Target Start/End: Complemental strand, 40141367 - 40141320
Alignment:
Q  487 atgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||| ||| |||||||||||||||| |||||||||||||| |||||    
T  40141367 atgagtattgttgttcccacatatagtttggctgtgccacacgagtaa 40141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 9365580 - 9365625
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| |||||||||| ||||||||| |||||||||||||| |||||    
T  9365580 gagtattgctgttcctacatatagtttggctgtgccacacgagtaa 9365625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 10098276 - 10098312
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||| |||||||||||||| |||||    
T  10098276 tgttcccacatatagtttggctgtgccacacgagtaa 10098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 20564012 - 20564052
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| ||||||| || |||||    
T  20564012 ttgctgttcccacatatagtatggttgtgccatacgagtaa 20564052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 20566489 - 20566453
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||| |||||||||||||| |||||    
T  20566489 tgttcccacatatagtttggctgtgccacacgagtaa 20566453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 41880457 - 41880493
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||| |||||    
T  41880457 tgttcccacatatagtatggttgtgccacacgagtaa 41880493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 487 - 535
Target Start/End: Complemental strand, 10624607 - 10624559
Alignment:
Q  487 atgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10624607 atgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 10624559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 213593 - 213546
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  213593 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 213546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 5334509 - 5334556
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5334509 tgagttttgctgttcccacatatagtagggctgtgccacaccagtaat 5334556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 18003413 - 18003366
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  18003413 tgagttttgctgttcccacatatagtatggctgtgccaaaccagtaat 18003366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 41559975 - 41560021
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  41559975 gagttttgttgttcccacatatactatggctgtgccacaccagtaat 41560021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 38945701 - 38945742
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  38945701 ttgctgttcccacatatagtatggctgtgccacacgagtaat 38945742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 43978470 - 43978515
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  43978470 gagtattgctgttcccacatatagtatggctgtgccacacgagtaa 43978515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 17420507 - 17420547
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  17420507 ttgctgttcccacatatagtatggctgtgccacacgagtaa 17420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 39793902 - 39793942
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  39793902 ttgctgttcccacatatagtatggctgtgccacacgagtaa 39793942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 39800786 - 39800746
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  39800786 ttgctgttcccacatatagtatggctgtgccacacgagtaa 39800746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 42505896 - 42505856
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  42505896 ttgctgttcccacatatagtatggctgtgccacacgagtaa 42505856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 3940868 - 3940823
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||    
T  3940868 gagtattgttgttcccacatatagtatggctgtgccacacgagtaa 3940823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 3935769 - 3935809
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  3935769 ttgctgttcccacatatagtttggctgtgccacacgagtaa 3935809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 15831070 - 15831106
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15831070 tgttcccacatatagtatggctgtgccacacgagtaa 15831106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 30497079 - 30497043
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  30497079 tgttcccacatatagtatggctgtgccacacgagtaa 30497043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 42499692 - 42499732
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  42499692 ttgctgttcccacatatagtttggctgtgccacacgagtaa 42499732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 43539867 - 43539831
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| ||||||||||||||||    
T  43539867 tgttcccacatatagtatggttgtgccacaccagtaa 43539831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 489 - 527
Target Start/End: Complemental strand, 43984473 - 43984435
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccaca 527  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  43984473 gagtattgctgttcccacatatagtttggctgtgccaca 43984435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 17426528 - 17426492
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||| |||||||||||||| |||||    
T  17426528 tgttcccacatatagtttggctgtgccacacgagtaa 17426492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 11713 - 11760
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11713 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 11760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 32379062 - 32379015
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379062 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 32379015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 32433017 - 32432970
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32433017 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 32432970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 30305682 - 30305637
Alignment:
Q  490 agttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30305682 agttttgctgttcccacatatagtatggctgtgccacaccagtaat 30305637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 7340000 - 7340046
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7340000 gagttttgctgtttccacatatagtatggctgtgccacaccagtaat 7340046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 487 - 535
Target Start/End: Complemental strand, 8423931 - 8423883
Alignment:
Q  487 atgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  8423931 atgagttttgatgttcccacatatagtatggctgtgccacaccattaat 8423883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 26659393 - 26659433
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26659393 ttgctgttcccacatatagtatggctgtgccacaccagtaa 26659433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 489760 - 489720
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  489760 ttgctgttcccacatatagtatggctgtgccacacgagtaa 489720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 1052497 - 1052537
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  1052497 ttgctgttcccacatatagtatggatgtgccacaccagtaa 1052537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 42485672 - 42485632
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  42485672 ttgctgttcccacatatagtatggctgtgccacacgagtaa 42485632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 22510482 - 22510527
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||    
T  22510482 gagtattgctgttctcacatatagtatggctgtgccacacgagtaa 22510527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 25664 - 25628
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  25664 tgttcccacatatagtatggctgtgccacacgagtaa 25628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 184686 - 184646
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  184686 ttgctgttcccacatatggtatggctgtgccacacgagtaa 184646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 2416146 - 2416182
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  2416146 tgttcccacatatagtatggctgtgccacacaagtaa 2416182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 23022417 - 23022381
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||| ||||||    
T  23022417 tgttcccacatatagtatggctgtgccacatcagtaa 23022381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 36678063 - 36678023
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  36678063 ttgctgttcccacatatggtatggctgtgccacacgagtaa 36678023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 534
Target Start/End: Original strand, 17924034 - 17924080
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||| | || |||||||||||||| |||||    
T  17924034 tgagttttgctgttcccacatgttgtttggctgtgccacacgagtaa 17924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Original strand, 20349390 - 20349437
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20349390 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 20349437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 38776267 - 38776220
Alignment:
Q  488 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38776267 tgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 38776220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 3983020 - 3983066
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3983020 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 3983066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 31946001 - 31945955
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31946001 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 31945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 3732487 - 3732447
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  3732487 ttgctgttcccacatatagtatggctgtgccacacgagtaa 3732447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 19924694 - 19924734
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  19924694 ttgctgttcccacatatagtatggctgtgccacacgagtaa 19924734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 26879425 - 26879389
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||    
T  26879425 tgttcccacatatagtatggctgtgccacaccagtaa 26879389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 3948544 - 3948496
Alignment:
Q  489 gagttttgctgttcccaca--tatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||  |||||||||| |||||||||||||||||    
T  3948544 gagttttgctgttcccacacatatagtatggttgtgccacaccagtaat 3948496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 534
Target Start/End: Complemental strand, 3993989 - 3993937
Alignment:
Q  482 tatttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||| ||||||||||||||| | || |||||||||||||| |||||    
T  3993989 tatttatgagtattgctgttcccacatgttgtttggctgtgccacacgagtaa 3993937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 13629343 - 13629383
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  13629343 ttgctgttcccacatatagtatggttgtgccacacgagtaa 13629383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 26875632 - 26875672
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  26875632 ttgctattcccacgtatagtatggctgtgccacaccagtaa 26875672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 30890004 - 30890040
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  30890004 tgttcccacatatagtatggctgtgccacacgagtaa 30890040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 534
Target Start/End: Original strand, 8473725 - 8473762
Alignment:
Q  497 ctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  8473725 ctgttcccacatatagtatggatgtgccacacgagtaa 8473762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 38633283 - 38633247
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||| |||||||||||||| |||||    
T  38633283 tgttcccacatatagtttggctgtgccacacgagtaa 38633247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 1612887 - 1612841
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1612887 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 1612841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 484 - 534
Target Start/End: Original strand, 27616644 - 27616694
Alignment:
Q  484 tttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  27616644 tttatgagaattgctgttcccacatatagtatggctgtgccacacgagtaa 27616694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 11694194 - 11694154
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  11694194 ttgctgttcccacatatagtttggctgtgccacacgagtaa 11694154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 30829785 - 30829745
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  30829785 ttgctgttcccacatatagtatggttgtgccacacgagtaa 30829745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 11688057 - 11688093
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||| |||||||||||||||||| |||||    
T  11688057 tgttcccacatacagtatggctgtgccacacgagtaa 11688093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 14279783 - 14279829
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14279783 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 14279829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 19041251 - 19041211
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  19041251 ttgctgttcccacatatagtatggctgtgccacacgagtaa 19041211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 527
Target Start/End: Complemental strand, 11033596 - 11033563
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccaca 527  Q
    ||||||||||||||||||||||||||||||||||    
T  11033596 ttgctgttcccacatatagtatggctgtgccaca 11033563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 11027038 - 11027074
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11027038 tgttcccacatatagtatggctgtgccacacgagtaa 11027074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 28241929 - 28241893
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  28241929 tgttcccacatatagtatggctgtgccacacgagtaa 28241893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 28886523 - 28886487
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  28886523 tgttcccacatatagtatggctgtgccacacgagtaa 28886487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 38860298 - 38860262
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  38860298 tgttcccacatatagtatggctgtgccacacgagtaa 38860262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 19035144 - 19035184
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  19035144 ttgctgttcccacatatagtttgactgtgccacacgagtaa 19035184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 37820977 - 37820941
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||| |||||    
T  37820977 tgttcccacatatagtatggttgtgccacacgagtaa 37820941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 3948662 - 3948708
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3948662 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 3948708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 8161109 - 8161063
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8161109 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 8161063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 489 - 535
Target Start/End: Complemental strand, 30947793 - 30947747
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  30947793 gagttttgctgttcccacatatagtatggttgtgccacaccagtaat 30947747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 42904316 - 42904276
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42904316 ttgctgttcccacatatagtatggctgtgccacaccagtaa 42904276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 2968059 - 2968019
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2968059 ttgctgttcccacatatagtatggctgtgccacacgagtaa 2968019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 34045347 - 34045387
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  34045347 ttgctgttcccacatatagtatggctgtgccacacgagtaa 34045387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 46388897 - 46388937
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  46388897 ttgctgttcccacatatagtatggctgtgccacacgagtaa 46388937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 50481517 - 50481477
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  50481517 ttgctgttcccacatatagtatggttgtgccacaccagtaa 50481477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 6740839 - 6740885
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||||||||||||||||||||||||||| ||||||| | |||||||    
T  6740839 gagttttgctgttcccacatatagtatggttgtgccaaatcagtaat 6740885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 54392167 - 54392122
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||    
T  54392167 gagtattgctgttcccacatatagtttggctgtgccacacgagtaa 54392122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 1835089 - 1835129
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  1835089 ttgctgttcccacatatggtatggctgtgccacacgagtaa 1835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 16444547 - 16444587
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  16444547 ttgctgttcccacatatagtatggttgtgccacacgagtaa 16444587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 29008829 - 29008865
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29008829 tgttcccacatatagtatggctgtgccacacgagtaa 29008865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 34051480 - 34051440
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  34051480 ttgctgttcccacatatagtttggctgtgccacacgagtaa 34051440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 46702159 - 46702119
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  46702159 ttgctgttcccacatatagtatggttgtgccacacgagtaa 46702119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 49144590 - 49144550
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  49144590 ttgctgttcccacatatagtatggctgtgtcacacgagtaa 49144550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Original strand, 49138511 - 49138553
Alignment:
Q  485 ttatgagttttgctgttcccacatatagtatggctgtgccaca 527  Q
    |||||||  |||||||||||||||||||| |||||||||||||    
T  49138511 ttatgagaattgctgttcccacatatagtttggctgtgccaca 49138553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 3953357 - 3953309
Alignment:
Q  486 tatgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||| ||||||||||||||| | || |||||||||||||| |||||    
T  3953357 tatgagtattgctgttcccacatgttgtttggctgtgccacacgagtaa 3953309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 46406758 - 46406718
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  46406758 ttgctgttcccacatatagtttggctgtgtcacacgagtaa 46406718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 54386072 - 54386112
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||| ||| ||||||||||||||||||||||||| |||||    
T  54386072 ttgctcttctcacatatagtatggctgtgccacacgagtaa 54386112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 535
Target Start/End: Complemental strand, 49566595 - 49566543
Alignment:
Q  483 atttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaat 535  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  49566595 atttaagagttttgctgttcccacatatagtatggttgtgccacaccagtaat 49566543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 1087799 - 1087839
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  1087799 ttgctgttcccacatatagtatggctgtgccacatcagtaa 1087839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 9893398 - 9893358
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  9893398 ttgctgttcccacatatagtatggctgtgccacacaagtaa 9893358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 31421645 - 31421685
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  31421645 ttgctgttctcacatatagtatggctgtgccacaccagtaa 31421685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 49090386 - 49090426
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  49090386 ttgctgttcccacatatagtatggctgtgccacacgagtaa 49090426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 52529143 - 52529192
Alignment:
Q  485 ttatgagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||  ||||||||||||||||| ||||||||||||||||| |||||    
T  52529143 ttatgagaattgctgttcccacatatggtatggctgtgccacacgagtaa 52529192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 1089714 - 1089678
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1089714 tgttcccacatatagtatggctgtgccacacgagtaa 1089678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 6181921 - 6181885
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  6181921 tgttcccacatatagtatggctgtgccacacgagtaa 6181885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 13173177 - 13173213
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13173177 tgttcccacatatagtatggctgtgccacacgagtaa 13173213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 13182228 - 13182192
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13182228 tgttcccacatatagtatggctgtgccacacgagtaa 13182192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 30726875 - 30726835
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  30726875 ttgctgttcccacatatagtatggatgtgccacacgagtaa 30726835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 41801071 - 41801031
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  41801071 ttgctgttcccacatatagtatggctgtgtcacacgagtaa 41801031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 54634149 - 54634109
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  54634149 ttgctgttcccacatatggtatggctgtgccacacgagtaa 54634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 6175781 - 6175826
Alignment:
Q  489 gagttttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||| ||| |||||||||||||||| |||||||||||||| |||||    
T  6175781 gagtattgttgttcccacatatagtttggctgtgccacacgagtaa 6175826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 1309248 - 1309208
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||| ||||||||||||||||| |||||||||| |||||    
T  1309248 ttgctgctcccacatatagtatggttgtgccacacgagtaa 1309208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 26932523 - 26932563
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  26932523 ttgctgttcccacatatagtttggctgtgtcacacgagtaa 26932563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 37563414 - 37563374
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  37563414 ttgctgttcccacatatggtaaggctgtgccacacgagtaa 37563374  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Original strand, 40352309 - 40352345
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||| |||||    
T  40352309 tgttcccacatatagtatggttgtgccacacgagtaa 40352345  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 41793270 - 41793310
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| ||||||||||| || |||||    
T  41793270 ttgctgttcccacatatagtttggctgtgccatacgagtaa 41793310  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 49096485 - 49096445
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| ||| |||||||||| |||||    
T  49096485 ttgctgttcccacatatagtttggttgtgccacacgagtaa 49096445  T

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Target: scaffold0101 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 534
Target Start/End: Complemental strand, 41190 - 41150
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  41190 ttgctgttcccacatatagtatggctgtgccacacgagtaa 41150  T

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Target: scaffold0744 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 552 - 516
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| ||||||||||||||||    
T  552 tgttcccacatatagtatggttgtgccacaccagtaa 516  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 494 - 534
Target Start/End: Original strand, 84486 - 84526
Alignment:
Q  494 ttgctgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  84486 ttgctgttcccacatatagtttggctgtgccacacgagtaa 84526  T

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Target: scaffold0293 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 527
Target Start/End: Complemental strand, 852 - 823
Alignment:
Q  498 tgttcccacatatagtatggctgtgccaca 527  Q
    ||||||||||||||||||||||||||||||    
T  852 tgttcccacatatagtatggctgtgccaca 823  T

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Target: scaffold1606 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1606
Description:

Target: scaffold1606; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 534
Target Start/End: Complemental strand, 91 - 55
Alignment:
Q  498 tgttcccacatatagtatggctgtgccacaccagtaa 534  Q
    |||||||||||||||| |||||||||||||| |||||    
T  91 tgttcccacatatagtttggctgtgccacacgagtaa 55  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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