View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14284_low_2 (Length: 514)
Name: NF14284_low_2
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14284_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 31010081 - 31010594
Alignment:
| Q |
1 |
ttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgtttgtggcttaggtggttgttggtttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010081 |
ttttcacctttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgtttgtggcttaggtggttgttggtttt |
31010180 |
T |
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| Q |
101 |
ggtggtaagtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtttcctgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010181 |
ggtggtaagtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtttcctgct |
31010280 |
T |
|
| Q |
201 |
ttgtttcacttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaattatggtgtttgggattgttattgcagtgttgggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31010281 |
ttgtttcacttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaattatggtgtttgggattgttattgcagtgttgggaa |
31010380 |
T |
|
| Q |
301 |
cttggtcttgcctaattgatattttttaccgtcaggcttgattaaacaataaaatctcttgatcatggttttaaactgtttgcggctgcaatataaagga |
400 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
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| T |
31010381 |
cttggtcttgcctaatggatattttttaccctcaggcttgattaaacaataaaatctcttaatcatggttttaaattgtttgcggccgcaatataaagga |
31010480 |
T |
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| Q |
401 |
tagtgaggtctctacaatgacatcagaactgcaatgtttaccgaaaccgtaatttaaaaccatggtctggttataaggttgagggttttttgatggagct |
500 |
Q |
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| T |
31010481 |
tattgaggtctctacaatgacatcacaactgcaatgtttatcgaaaccgtaatttaaaaccatggtctggttataaggttgaggattttttgatggagct |
31010580 |
T |
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| Q |
501 |
attagttgaggtat |
514 |
Q |
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| T |
31010581 |
attagttgaggtat |
31010594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 9e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 9782592 - 9782324
Alignment:
| Q |
9 |
tttcctttgatgatgaatcctgtttatgaaattgttgagagaagattttgtaaatctaagtattgtttgtggcttaggtggttgttggttttggtggtaa |
108 |
Q |
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||||||||||||||||||||||||||||| || |||||||||| |||||| | |||| ||||||||| ||| | ||||||||||||||||||||||| | |
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| T |
9782592 |
tttcctttgatgatgaatcctgtttatgaggtttttgagagaaggttttgtgattctaggtattgtttatgggtgaggtggttgttggttttggtggtga |
9782493 |
T |
|
| Q |
109 |
gtttagtcgcatttttggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtttcctgctttgtttca |
208 |
Q |
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| T |
9782492 |
gtttggtggcagttttggtgccaaattttgctgattttttgtcacttgttggaagtagtgtttgtgttgttcttggttttgtgttgcctgctttgtttca |
9782393 |
T |
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| Q |
209 |
cttcttggtttttagagatgaattgggttggaaatgtttggtttttgatggagcaattatggtgtttgg |
277 |
Q |
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| ||||||||| || || |||||||||||||| ||||||| ||||| ||||||||||| ||||| |
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| T |
9782392 |
ttgtatggtttttaaggaagagttgggttggaaatgcttggtttcagatggggcaattatggtttttgg |
9782324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 16353116 - 16353200
Alignment:
| Q |
124 |
tggtacctaactttgctgattttttgtcactagttgggagcagtgtttgtgttattcttagctttgtgtttcctgctttgtttca |
208 |
Q |
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|||| ||||| |||||||||||| | ||||| ||||| |||||||| ||| || | ||| | ||||||||| |||||||| |||| |
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| T |
16353116 |
tggtgcctaattttgctgattttctttcacttgttggaagcagtgtgtgtattgtgcttggatttgtgttttctgctttgattca |
16353200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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