View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14284_low_4 (Length: 342)
Name: NF14284_low_4
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14284_low_4 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold1526 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0642 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 4949 - 5205
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4949 |
cttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
5048 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5049 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggt |
5148 |
T |
|
| Q |
227 |
tgnnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5149 |
tgtttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
5205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 14862 - 15118
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14862 |
cttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
14961 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14962 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggt |
15061 |
T |
|
| Q |
227 |
tgnnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
15062 |
tgtttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
15118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 24119 - 23863
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24119 |
cttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
24020 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24019 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggt |
23920 |
T |
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| Q |
227 |
tgnnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23919 |
tgtttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
23863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 3379166 - 3379422
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3379166 |
cttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
3379265 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3379266 |
tatcactgtgaagctacttcttctctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggt |
3379365 |
T |
|
| Q |
227 |
tgnnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3379366 |
tgtttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
3379422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 283
Target Start/End: Original strand, 44496434 - 44496691
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44496434 |
cttttcaaacatccaatgtgtatttcaatggattatatataaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
44496533 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44496534 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
44496633 |
T |
|
| Q |
227 |
tg-nnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44496634 |
tgttttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
44496691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 346 - 90
Alignment:
| Q |
38 |
cttttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgcca |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
346 |
cttttcaaacatccaatgtgtatttcaatggattatatgtaaatgtcatctttcgtctgtgtatgctactgttaagctacttcttctaggtgttctgcca |
247 |
T |
|
| Q |
127 |
tatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggt |
226 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
246 |
tatcactttgaagctacttcttctctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggt |
147 |
T |
|
| Q |
227 |
tgnnnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
146 |
tgtttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
90 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 41 - 283
Target Start/End: Complemental strand, 53027 - 52774
Alignment:
| Q |
41 |
ttcaaacatccaatgtgtatttcaatggattatgtgtaaatgtcatctttcgt-----------actgttaagctacttcttctaggtgttctgccatat |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
53027 |
ttcaaacatccaatgtgtattttaatggattatatgtaaatgtcatctttcgtctgtgtatactactgttaagctacttcttctaggtgttctgccatat |
52928 |
T |
|
| Q |
130 |
cactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttatgcttttggttgn |
229 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52927 |
cactatgaagctacttcttctctgtttgagtcattcttctcaccacatcggtgttctgccattttcttacatgatttaggttatttctgcttttggttgt |
52828 |
T |
|
| Q |
230 |
nnnnnnctttacatcacttcatatattcttcttttatctttaattttgcctttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52827 |
ttttttctttacatcacttcatatattcttcttttatctttaattttgcttttg |
52774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 36931799 - 36931671
Alignment:
| Q |
100 |
aagctacttcttctaggtgttctgccatatcactgtgaagctacttcttatctgtttgagtcattcttctcaccacatcggtgttctgccattttcttac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36931799 |
aagctacttcttctaggtgttctgccatatcaccgtgaagctacttcttctttgttcgattcattcttctcaccacatcggtgttctgccattttcttac |
36931700 |
T |
|
| Q |
200 |
atgatttaggttatttatgcttttggttg |
228 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
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|
| T |
36931699 |
atgatttaggtgatttatgctttaggttg |
36931671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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