View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14284_low_7 (Length: 210)
Name: NF14284_low_7
Description: NF14284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14284_low_7 |
 | |
|
| [»] scaffold0133 (2 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0133 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 12891 - 13076
Alignment:
| Q |
1 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
12891 |
ttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttc------tttccatgttg |
12984 |
T |
|
| Q |
101 |
caatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
||| |||| |||| |||||||||| |||| |||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
12985 |
caacgaagacttgaacttattccatttctcttggtcttcactccacacatcatcaagaacaagcaaataccttttgttttgcaaaatttctt |
13076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8549 - 8734
Alignment:
| Q |
1 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | |
|
|
| T |
8549 |
ttgctaaatgatgagcatcagaagttcccatgatggatgcaacaatgtcaagtctggtagtgatcaaaattgatgcacctttc------tttccatttag |
8642 |
T |
|
| Q |
101 |
caatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
||| | |||| | || |||||||||| |||| |||||||||||||||||||||| |||||||||||||| | || |||||||||||||||| |
|
|
| T |
8643 |
caacaaagactttaacttattccatttctctttgtcttcagtccacacatcatcaagaacaagtaaatacctatttttttgcaaaatttctt |
8734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 18806310 - 18806127
Alignment:
| Q |
6 |
aaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaata |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| | |
|
|
| T |
18806310 |
aaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaattgatgcacctttcgtgccatttccacgttgcagaa |
18806211 |
T |
|
| Q |
106 |
cagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaattt |
189 |
Q |
| |
|
| || |||| | |||||||| |||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||| |
|
|
| T |
18806210 |
aatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaattt |
18806127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 16987505 - 16987681
Alignment:
| Q |
10 |
gatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacaga |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| || |||| |||| ||||| |
|
|
| T |
16987505 |
gatgagcaggataagttcccatgatggatgcaacattgtcaagtctggtggtgaccaaaactgatgcacctttcgttctatttt------gcaacacaga |
16987598 |
T |
|
| Q |
110 |
catgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
| |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| | |||||||| |
|
|
| T |
16987599 |
cttgaacttattccatttctctcggtcttcagtccacacatcatcaagaacaagtaaataccttttgttttgtagaatttctt |
16987681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 18873304 - 18873123
Alignment:
| Q |
6 |
aaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaata |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| || ||| | |
|
|
| T |
18873304 |
aaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaa |
18873205 |
T |
|
| Q |
106 |
cagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaat |
187 |
Q |
| |
|
| || |||| | |||||||| |||| |||||||| |||||||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
18873204 |
aatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttgcaaaat |
18873123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 16868100 - 16867937
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||| | |||| | || |||||| |
|
|
| T |
16868100 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
16868007 |
T |
|
| Q |
123 |
cattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||| |||| |||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16868006 |
catttctcttggtcttcactccaaacatcatcaagaacaagcaaatactttttgttttgcaaaatttctt |
16867937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 17069552 - 17069733
Alignment:
| Q |
5 |
taaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaat |
104 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | | || |
|
|
| T |
17069552 |
taaaggatgagcatcatgagttcccatgatggatgcaacaatgtcaagtctggtagtgactaaaattgatgcacctttc------tttccatttggtaac |
17069645 |
T |
|
| Q |
105 |
acagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
| |||| |||| ||||||||| | || |||| ||| |||||||||||||| ||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
17069646 |
aaagacttgaagctattccatttcacttggtcatcactccacacatcatcaagaacaagcaaataccttttgctttgcaaaatttctt |
17069733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 16658073 - 16658236
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||| | |||| | || |||||| |
|
|
| T |
16658073 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
16658166 |
T |
|
| Q |
123 |
cattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||| |||| |||||||| |||| ||||||||| ||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
16658167 |
catttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatctt |
16658236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 16797226 - 16797393
Alignment:
| Q |
19 |
cataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaattt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| | ||| |||| | |
|
|
| T |
16797226 |
cataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttc------tttccatttggcaacaatgacttgaacgt |
16797319 |
T |
|
| Q |
119 |
attccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||||||| | || |||| ||| |||||||||||||| ||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
16797320 |
attccatttcacttggtcatcactccacacatcatcaagaacaagcaaatacctttggttttgcaaaatttctt |
16797393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 16837741 - 16837904
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||| | |||| |||| ||||| |
|
|
| T |
16837741 |
agttcccatgatggatgcaacaatctcaagtctggtagtgaccaaaattgatgcacctttc------tttccatttggcaacaaagacttgaacgtattc |
16837834 |
T |
|
| Q |
123 |
cattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||| | || |||| ||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
16837835 |
catttcacttggtcatcactccacacatcatcaagaacaagcaaataccttttgttttgcaaaatttctt |
16837904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 16788013 - 16788193
Alignment:
| Q |
5 |
taaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaat |
104 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||| | |||| |
|
|
| T |
16788013 |
taaacgatgagcatgataagttgccatgatggatgcaacaatgtcaagtcgtgcagtgaccaaaattgatgcacctttcg------tttcatattgcaac |
16788106 |
T |
|
| Q |
105 |
acagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
| |||| |||| |||||||||| |||| |||||||| |||||||||||||| ||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
16788107 |
aaagacttgaacttattccatttctcttggtcttcattccacacatcatcaagaacaagtagataccttttgttttg-aaaatttctt |
16788193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 16843925 - 16844055
Alignment:
| Q |
57 |
gtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattccattcctctcggtcttcagtccacacatcatcat |
156 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||| | |||| | ||||||||| |||| ||||| | | |||||||| |||| ||||| ||| |
|
|
| T |
16843925 |
gtagtgaccaaaactgatgcaccttttgttccatttccacattgcaaaaaagacatgaacttatcccatttatgttggtcttcattccaaacatcgtcaa |
16844024 |
T |
|
| Q |
157 |
gaacaagtaaatactttttgttttgcaaaat |
187 |
Q |
| |
|
| |||||||||||| |||||||||||||||| |
|
|
| T |
16844025 |
ggacaagtaaataccttttgttttgcaaaat |
16844055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 16781163 - 16781223
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttc |
83 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| |||| ||||||| |
|
|
| T |
16781163 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgaacctttc |
16781223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 16781282 - 16781332
Alignment:
| Q |
142 |
tccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
16781282 |
tccacacatcatccagtacaagtaaatactttttgctttgcaaaacttctt |
16781332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 4720 - 4901
Alignment:
| Q |
6 |
aaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaata |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| || ||| | |
|
|
| T |
4720 |
aaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaa |
4819 |
T |
|
| Q |
106 |
cagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaat |
187 |
Q |
| |
|
| || |||| | |||||||| |||| |||||||| |||||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
4820 |
aatacttgaactgattccatttctcttggtcttcattccacacatcatcaagaacaagtagatatcttttgttttgcaaaat |
4901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 9400 - 9581
Alignment:
| Q |
6 |
aaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaata |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||| || ||| | |
|
|
| T |
9400 |
aaatgatgagcaggataagttcccatgattgatgcaacaatgtcaagtctggttgtgaccaaaactgatgcacctttcgtgccatttccacgttgcagaa |
9499 |
T |
|
| Q |
106 |
cagacatgaatttattccattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaat |
187 |
Q |
| |
|
| || |||| | |||||||| |||| |||||||| |||||||||||||| ||||||||| ||| |||| ||||||||||| |
|
|
| T |
9500 |
aatacttgaactgattccatttctcttggtcttcaatccacacatcatcaagaacaagtagatatcttttattttgcaaaat |
9581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 37551 - 37714
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcgctccatttccatgtcgcaatacagacatgaatttattc |
122 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||| || |||| | |||| | || |||||| |
|
|
| T |
37551 |
agttcccatgatggatgcaacaatctgaagtctggtagtgaccaatattgatgcacctttc------tttccaagttgcaacaaagactttaacttattc |
37644 |
T |
|
| Q |
123 |
cattcctctcggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||| |||| |||||||| |||| ||||||||| ||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
37645 |
catttctcttggtcttcactccaaacatcatcaagaacaagcaaataccttttgttttgcaaaatatctt |
37714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 7053363 - 7053303
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttc |
83 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
7053363 |
agttcccatgatagatgcaacaatttcaagtcttgtagtgactaaaattgatgaacctttc |
7053303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 38939456 - 38939395
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcg |
84 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| ||||| ||||||| |
|
|
| T |
38939456 |
agttcccatgatggatgcaacaatctcaagtcgtgttgtgactaaaatagatgcccctttcg |
38939395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 9208 - 9269
Alignment:
| Q |
23 |
agttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatgcacctttcg |
84 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || ||||| ||||| ||||||||||||| |
|
|
| T |
9208 |
agttcccatgatggatgcaacaatatcaagtcgtgttgtgactaaaatagatgcacctttcg |
9269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 9327 - 9377
Alignment:
| Q |
142 |
tccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9327 |
tccacacatcatcgagtacaagtaaatactttttgctttgcaaaacttctt |
9377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 13378138 - 13378207
Alignment:
| Q |
6 |
aaatgatgagcatcataagttcccatgatggatgcaacaatgtcaagtctggtagtgaccaaaattgatg |
75 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
13378138 |
aaatgatgagcagggtgagttcccatgatggatgcaacaatctcaagtcgcgtagtgactaaaattgatg |
13378207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 13378265 - 13378324
Alignment:
| Q |
133 |
ggtcttcagtccacacatcatcatgaacaagtaaatactttttgttttgcaaaatttctt |
192 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
13378265 |
ggtcttcattccacacatcatctagtacaagtaaataccttttgctttgcaaaacttctt |
13378324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University