View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_high_12 (Length: 405)
Name: NF14285_high_12
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 389
Target Start/End: Original strand, 5540324 - 5540708
Alignment:
| Q |
4 |
aaaattgaaattttggctggtacttagtatgattgatggaacataaagcatcataaaattgacggtttagtgctcctcaatatgtcgtaaaacttctaca |
103 |
Q |
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| T |
5540324 |
aaaattgaaattttggttggtacttagtatgattgatggaacataaaacatcataaaattgacggtttaatgctcctcaatatgtcgtaaaacttctaca |
5540423 |
T |
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| Q |
104 |
gagagaggactaaaaagaacaaagctgaattgtttattattgtcagtttgtaaggaaaaagttaatacggtcatggaagaatgagattggttgaagctca |
203 |
Q |
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| T |
5540424 |
gagagaggactaaaaagaacaaagctgaattgtttattattgtcagtttgtaaggaaaaagttaatacggtcatggaagaatgagattggttgaagctca |
5540523 |
T |
|
| Q |
204 |
ggtagggtaccttaaaaaggaaaattgagaacatgttgaattaaaatatgtaaagaaattgaaggaataatcttcttggtctatgttttaattgtcaatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5540524 |
ggtagggtaccttaaaaaggaaaattgagaacatgttgaatt-aaatatgtaaagaaattgaaggaataatcttcttggtctatgttttaattgtcaatt |
5540622 |
T |
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| Q |
304 |
taaatcaaaactacgtaattcaattctatccagcaaagctagctaattctaacnnnnnnntgtgtcctttttacttggaatgaaaa |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5540623 |
taaatcaaaactacgtaattcaattctatccagcaaagctagctaattctaacaaaaaaatgtgtcctttttacttggaatgaaaa |
5540708 |
T |
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