View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14285_high_15 (Length: 339)

Name: NF14285_high_15
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14285_high_15
NF14285_high_15
[»] scaffold0186 (1 HSPs)
scaffold0186 (4-323)||(22546-22869)
[»] chr8 (25 HSPs)
chr8 (1-323)||(41570262-41570585)
chr8 (171-323)||(18881850-18882001)
chr8 (75-259)||(13541418-13541603)
chr8 (75-259)||(13682870-13683055)
chr8 (75-323)||(38699685-38699933)
chr8 (75-304)||(43115119-43115347)
chr8 (102-286)||(38172759-38172948)
chr8 (98-243)||(4072227-4072373)
chr8 (98-243)||(21441593-21441739)
chr8 (97-283)||(40118063-40118247)
chr8 (98-243)||(41323181-41323327)
chr8 (3-183)||(6115005-6115186)
chr8 (75-194)||(32415814-32415934)
chr8 (179-323)||(12491566-12491711)
chr8 (171-299)||(1233551-1233675)
chr8 (171-299)||(13640907-13641031)
chr8 (206-299)||(13741319-13741409)
chr8 (1-165)||(18881334-18881503)
chr8 (215-323)||(6114891-6114998)
chr8 (237-297)||(25337926-25337985)
chr8 (75-137)||(5808783-5808845)
chr8 (75-213)||(31911087-31911226)
chr8 (157-187)||(18881806-18881836)
chr8 (3-51)||(32415742-32415790)
chr8 (1-37)||(38173003-38173039)
[»] chr4 (22 HSPs)
chr4 (75-326)||(21790669-21790922)
chr4 (1-320)||(54165895-54166210)
chr4 (75-257)||(48841086-48841262)
chr4 (76-257)||(48861905-48862087)
chr4 (87-323)||(8745635-8745871)
chr4 (75-323)||(17815906-17816149)
chr4 (204-323)||(6016763-6016882)
chr4 (205-323)||(22786054-22786172)
chr4 (98-243)||(43892522-43892668)
chr4 (205-323)||(2407181-2407300)
chr4 (102-256)||(52628216-52628371)
chr4 (171-287)||(46693934-46694050)
chr4 (237-323)||(11950600-11950686)
chr4 (209-298)||(5476358-5476447)
chr4 (215-299)||(16608373-16608454)
chr4 (215-258)||(8762618-8762661)
chr4 (1-56)||(48861832-48861886)
chr4 (209-297)||(42318948-42319035)
chr4 (85-178)||(8762706-8762800)
chr4 (1-41)||(2407103-2407143)
chr4 (1-41)||(6016919-6016959)
chr4 (1-41)||(22785976-22786016)
[»] chr1 (28 HSPs)
chr1 (75-323)||(47367775-47368025)
chr1 (75-323)||(1600504-1600755)
chr1 (3-257)||(23614476-23614729)
chr1 (87-323)||(11142599-11142835)
chr1 (89-323)||(44961379-44961613)
chr1 (75-304)||(10406128-10406355)
chr1 (75-305)||(10177812-10178042)
chr1 (75-286)||(19313298-19313507)
chr1 (79-323)||(52110950-52111177)
chr1 (98-243)||(15757676-15757822)
chr1 (179-323)||(30950761-30950906)
chr1 (98-243)||(10620063-10620209)
chr1 (179-311)||(29799018-29799150)
chr1 (206-297)||(24134376-24134466)
chr1 (206-299)||(27696493-27696583)
chr1 (199-258)||(28403126-28403185)
chr1 (209-298)||(40268669-40268759)
chr1 (218-286)||(33240850-33240918)
chr1 (223-323)||(21972478-21972576)
chr1 (223-323)||(46515655-46515753)
chr1 (215-295)||(29358495-29358572)
chr1 (1-56)||(29357175-29357230)
chr1 (1-56)||(29799147-29799202)
chr1 (215-297)||(10989196-10989278)
chr1 (139-240)||(8262067-8262168)
chr1 (221-290)||(33322903-33322972)
chr1 (75-182)||(33241370-33241477)
chr1 (223-297)||(5184669-5184741)
[»] chr5 (18 HSPs)
chr5 (82-323)||(16908575-16908815)
chr5 (75-323)||(41639989-41640237)
chr5 (83-287)||(40360994-40361197)
chr5 (98-243)||(17768976-17769122)
chr5 (98-243)||(13517498-13517644)
chr5 (145-257)||(34034071-34034183)
chr5 (179-311)||(40528123-40528255)
chr5 (75-282)||(19948812-19949018)
chr5 (215-315)||(7008942-7009042)
chr5 (142-304)||(17695850-17696012)
chr5 (171-323)||(6536537-6536689)
chr5 (223-323)||(42353206-42353304)
chr5 (209-297)||(14521679-14521766)
chr5 (215-298)||(3498434-3498517)
chr5 (75-133)||(22099030-22099088)
chr5 (89-134)||(34033998-34034043)
chr5 (3-56)||(40528252-40528305)
chr5 (4-56)||(19949037-19949089)
[»] chr2 (17 HSPs)
chr2 (81-323)||(4435175-4435417)
chr2 (157-323)||(42799108-42799275)
chr2 (205-323)||(45655899-45656017)
chr2 (139-287)||(21746137-21746285)
chr2 (179-323)||(16546354-16546499)
chr2 (204-316)||(39070154-39070267)
chr2 (221-323)||(14802671-14802774)
chr2 (139-194)||(26180634-26180689)
chr2 (209-299)||(35524657-35524747)
chr2 (179-316)||(37614591-37614731)
chr2 (2-56)||(26180505-26180560)
chr2 (1-56)||(16546302-16546357)
chr2 (75-149)||(18159944-18160019)
chr2 (75-165)||(18161103-18161193)
chr2 (85-178)||(8230253-8230347)
chr2 (85-178)||(35524790-35524884)
chr2 (81-165)||(18308106-18308191)
[»] chr3 (26 HSPs)
chr3 (1-257)||(16152135-16152390)
chr3 (98-305)||(17652926-17653133)
chr3 (205-323)||(20843140-20843258)
chr3 (215-323)||(52403230-52403338)
chr3 (98-243)||(21295932-21296078)
chr3 (98-243)||(46823804-46823950)
chr3 (79-194)||(11027932-11028048)
chr3 (160-320)||(29648402-29648564)
chr3 (215-305)||(38171472-38171566)
chr3 (179-323)||(40763813-40763958)
chr3 (79-183)||(52403345-52403449)
chr3 (215-323)||(11906547-11906655)
chr3 (215-299)||(19795664-19795745)
chr3 (85-183)||(11906662-11906760)
chr3 (206-300)||(37175495-37175588)
chr3 (206-299)||(35062063-35062153)
chr3 (218-330)||(35106437-35106547)
chr3 (224-305)||(40785772-40785851)
chr3 (179-323)||(3458029-3458173)
chr3 (223-297)||(36312269-36312341)
chr3 (3-49)||(11906792-11906838)
chr3 (75-137)||(29123490-29123552)
chr3 (2-56)||(40785343-40785397)
chr3 (3-48)||(52403473-52403518)
chr3 (1-41)||(20843296-20843336)
chr3 (79-150)||(31434187-31434259)
[»] scaffold0005 (1 HSPs)
scaffold0005 (87-323)||(292189-292425)
[»] chr7 (28 HSPs)
chr7 (155-320)||(34659370-34659535)
chr7 (98-305)||(48609044-48609251)
chr7 (75-323)||(29715766-29716014)
chr7 (104-257)||(758835-758989)
chr7 (104-257)||(46211663-46211817)
chr7 (215-323)||(25592168-25592276)
chr7 (98-243)||(39719879-39720025)
chr7 (179-323)||(13465458-13465603)
chr7 (108-257)||(83617-83768)
chr7 (79-264)||(37202722-37202908)
chr7 (84-290)||(17949051-17949259)
chr7 (179-323)||(28491315-28491460)
chr7 (79-183)||(25592056-25592161)
chr7 (225-305)||(4677983-4678061)
chr7 (215-316)||(14047053-14047153)
chr7 (215-316)||(14357083-14357183)
chr7 (206-299)||(45855585-45855676)
chr7 (75-137)||(27097112-27097174)
chr7 (75-137)||(27181129-27181191)
chr7 (75-137)||(37712936-37712998)
chr7 (221-299)||(40253593-40253671)
chr7 (223-297)||(20926806-20926878)
chr7 (206-297)||(37049134-37049224)
chr7 (217-264)||(25439575-25439623)
chr7 (1-48)||(25591978-25592025)
chr7 (1-56)||(28491263-28491318)
chr7 (75-130)||(34659016-34659071)
chr7 (224-323)||(37003822-37003919)
[»] chr6 (19 HSPs)
chr6 (98-257)||(34729775-34729935)
chr6 (79-293)||(29486376-29486588)
chr6 (104-257)||(29363531-29363685)
chr6 (75-263)||(24428716-24428907)
chr6 (215-323)||(21216444-21216552)
chr6 (215-323)||(22956396-22956504)
chr6 (215-323)||(23831888-23831996)
chr6 (179-323)||(1780595-1780740)
chr6 (79-183)||(22956511-22956616)
chr6 (79-183)||(23831776-23831881)
chr6 (215-323)||(31216241-31216346)
chr6 (215-299)||(8559888-8559969)
chr6 (79-183)||(31216353-31216459)
chr6 (223-305)||(903993-904073)
chr6 (75-133)||(27673963-27674021)
chr6 (261-299)||(33224841-33224879)
chr6 (1-49)||(22956645-22956693)
chr6 (1-49)||(23831699-23831747)
chr6 (1-56)||(8560095-8560150)
[»] scaffold0481 (1 HSPs)
scaffold0481 (75-251)||(6599-6773)
[»] scaffold0110 (2 HSPs)
scaffold0110 (83-194)||(6960-7072)
scaffold0110 (1-51)||(7104-7154)
[»] scaffold1554 (1 HSPs)
scaffold1554 (84-181)||(715-812)
[»] scaffold0002 (2 HSPs)
scaffold0002 (157-274)||(428333-428449)
scaffold0002 (2-51)||(428555-428604)
[»] scaffold0004 (1 HSPs)
scaffold0004 (206-299)||(212060-212150)
[»] scaffold1709 (1 HSPs)
scaffold1709 (75-130)||(1396-1451)


Alignment Details
Target: scaffold0186 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 22546 - 22869
Alignment:
Q  4 aataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagat----tcatt 99  Q
    ||||||||||||||| ||| |||||||||||| ||||||| |||||||||||| ||               ||||||||||||||||| ||    |||||    
T  22546 aataataaacattgaactatctcaaataagtttagttgccgaaaattagcatagataagaaagttaaacaattactacatgattgatatataaattcatt 22645  T
Q  100 tgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggt 198  Q
    |||||||||||| |||||||||| ||||||||||| ||  |||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||     
T  22646 tgtattggtttggaacttccggtttcaataacaacaatagagaaaactttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggc 22745  T
Q  199 aatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 298  Q
    | ||  ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||     
T  22746 attgaatttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatcaattatgaataaaattgacttcttgaaa- 22844  T
Q  299 acattttaaccaacttttctaaata 323  Q
     ||||||  |||| |||||||||||    
T  22845 tcattttgtccaaattttctaaata 22869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 41570262 - 41570585
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcattt 100  Q
    |||||||||||| ||||||||||| |||| ||||||||||||| |||||| ||||| ||               ||| ||||||||||||||||  || |    
T  41570262 ccaaataataaatattgagctaccccaaaaaagttcagttgccgaaaatttgcatatataagaaagttaaaaaattattacatgattgatagat--atgt 41570359  T
Q  101 gtattggtttgaaacttccggtctcaataacaactatt---agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatagg 197  Q
    ||||||||||| ||||| |||||| | ||||||||||    |||||||||||| || ||||| ||||||||||  ||||||||||||||||||||||  |    
T  41570360 gtattggtttggaactttcggtcttattaacaactatatagagaaaactttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgag 41570459  T
Q  198 taatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat-aaaattgacttcttaaa 296  Q
    ||||| |||||||||| ||||||||||||||||| || ||||| |||  |||||||||||||||||| |||||||||||||| ||||||| |||||| ||    
T  41570460 taatgagtttcttgcaaataacctatttgtttacctt-aaaaaaacaacattaatctattttgtaaacaatcaattatggataaaaattggcttcttgaa 41570558  T
Q  297 acacattttaaccaacttttctaaata 323  Q
    || |||||   ||||||||||||||||    
T  41570559 acgcatttagtccaacttttctaaata 41570585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 171 - 323
Target Start/End: Original strand, 18881850 - 18882001
Alignment:
Q  171 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 270  Q
    |||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  271 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||||||||| |||||| |||  ||||||  |||| |||||||||||    
T  18881950 attatggataaaattgccttcttgaaa-tcattttgtccaaattttctaaata 18882001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 259
Target Start/End: Complemental strand, 13541603 - 13541418
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||| | |||||||| ||| |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||    
T  13541603 ttactataagattgatatatttatttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagaca 13541504  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 259  Q
    ||||||||| | | ||||||| |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13541503 atagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 13682870 - 13683055
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||| | |||||||| ||| |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||    
T  13682870 ttactataagattgatatatttatttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagaca 13682969  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 259  Q
    ||||||||| | | ||||||| |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13682970 atagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13683055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 38699933 - 38699685
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 172  Q
    |||||||| |||||| ||||| ||||||||| |||||| |||  || ||||||||||||| | |||| |||| ||||| || ||||||||||||||||||    
T  38699933 ttactacaagattgacagatttatttgtatttgtttgatactctcgatctcaataacaac-agtagagaaacatttttcaacaataaaaattatcaagac 38699835  T
Q  173 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 272  Q
    |||||||||  ||| ||||||| |  | || |||||||||| ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || ||    
T  38699834 aatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctat 38699736  T
Q  273 tatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||| ||| ||||||  ||||| |||| ||||||  ||||| ||||||||||    
T  38699735 tattgatgaaattgggttcttgaaacgcattttgcccaacgtttctaaata 38699685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 43115119 - 43115347
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaactttttt-aaaaataaaaattatcaagaca 173  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| ||||||||||||| | |||| ||||||||| || |||||||||||||||||||    
T  43115119 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaac-aatagagaacttttttcaacaataaaaattatcaagaca 43115217  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 273  Q
    ||||||||  | | | ||||| |  | || |||||||||| ||||| ||||| ||||||||  |||| |||||||||||||||| | |||| | ||||||    
T  43115218 atagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacattattaatctattat-taaacagtcaatt 43115316  T
Q  274 atggataaaattgacttcttaaaacacattt 304  Q
    || ||| ||||||  ||||| |||| |||||    
T  43115317 attgatgaaattgggttcttgaaacgcattt 43115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 286
Target Start/End: Complemental strand, 38172948 - 38172759
Alignment:
Q  102 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 200  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||||| |||||||    ||    
T  38172948 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaa 38172849  T
Q  201 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatc----tattttgtaaataatcaattatggataaaattg 286  Q
    || |||| ||||| |||||||||| |||||||||| | || ||||||||||||    ||||| ||||| | |||||||||||||||||||    
T  38172848 tgagtttattgcaaataacctattagtttacattggagaatacattattaatctatatatttagtaaacactcaattatggataaaattg 38172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 4072373 - 4072227
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||| | |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  4072373 tttgtattggtttgatactttccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 4072274  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  4072273 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 4072227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 21441739 - 21441593
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| || ||||||||| ||||| |||||||||||| ||| |||||||      
T  21441739 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgt 21441640  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21441639 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 283
Target Start/End: Original strand, 40118063 - 40118247
Alignment:
Q  97 atttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    |||| ||||||||||| ||||||    |||||||||| ||| |||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| |    
T  40118063 atttatattggtttgatacttccaaattcaataacaattat-agaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatgg 40118161  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaa 283  Q
      ||||  ||| ||||| |||| ||||| |||||||||| |||| | ||||||||||||  | ||||| | ||||||||||| ||||    
T  40118162 acaatgaatttattgcaaataatctattagtttacattg-aaaatatattattaatctacctagtaaacactcaattatggaaaaaa 40118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 41323327 - 41323181
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || |  |||| ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  41323327 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 41323228  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| |||| |||||| ||||||||  |||||||    
T  41323227 acaatgagtttcttgcaaataaactatttatttacatttgaaaagac 41323181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 6115186 - 6115005
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgt 102  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||| || |||| ||               ||| ||||| ||||||||||| ||||||    
T  6115186 aaataataaacattgaactaccccaaacaagttcagttgccaaaaaataacataaataagaaagtaaaaaaattattacatcattgatagatttatttgt 6115087  T
Q  103 attggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 183  Q
    |||||||||  ||||| | |||||||||||| |||  ||| ||||||||||| |||||||| |||||||||| |||||||||    
T  6115086 attggtttggtacttctgatctcaataacaattatagagagaacttttttaacaataaaaactatcaagacagtagtcataa 6115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 32415814 - 32415934
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagaca 173  Q
    ||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||    | ||| |||||| ||||||    
T  32415814 ttactacatcattgatagatttatttatattggtttgatacttccggtctcaataacaattatatagaaaaccttttcggtagtaacaattattaagaca 32415913  T
Q  174 atagtcataaacatattaaat 194  Q
    ||| ||||||||| |||||||    
T  32415914 ataatcataaacaaattaaat 32415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 12491566 - 12491711
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||| |||||  ||||| |||  |||||||  |||||||| ||||||    
T  12491666 atacaattggtttcttgaaatgcattttacacaacttttttaaata 12491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 1233675 - 1233551
Alignment:
Q  171 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 270  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 1233580  T
Q  271 attatggataaaattgacttcttaaaaca 299  Q
    |||||||||||||||||||||||||||||    
T  1233579 attatggataaaattgacttcttaaaaca 1233551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 299
Target Start/End: Complemental strand, 13641031 - 13640907
Alignment:
Q  171 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 270  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 13640936  T
Q  271 attatggataaaattgacttcttaaaaca 299  Q
    |||||||||||||||||||||||||||||    
T  13640935 attatggataaaattgacttcttaaaaca 13640907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 13741409 - 13741319
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  13741409 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 13741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18881334 - 18881503
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagat----tc 96  Q
    |||||||||||||||||| ||||||||||||||||  |||||  |||||||||||| ||               ||||||||||||||||| ||    ||    
T  18881334 ccaaataataaacattgaactacctcaaataagtttggttgctgaaaattagcatagataagaaagttaaacaattactacatgattgatatataaattc 18881433  T
Q  97 atttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaatta 165  Q
    |||||||||| |||| |||||||||| ||||||||||| ||  |||||||||||| || |||||||||||    
T  18881434 atttgtattgatttggaacttccggtttcaataacaacgatagagaaaactttttcaataataaaaatta 18881503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 6114998 - 6114891
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| ||||| || ||||||| |||| | |||||||||||||||| |||||| ||  |||||||||||||||  ||||| |||||||||||| ||| |||    
T  6114998 ataatctattcgtgtacattggaaaatatattattaatctattttataaatagtcctttatggataaaattg-gttcttgaaacacattttatccagctt 6114900  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  6114899 ttttaaata 6114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 25337985 - 25337926
Alignment:
Q  237 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||    
T  25337985 aaaagacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaa 25337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 5808845 - 5808783
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 137  Q
    ||||||||| ||||||||||| ||||||||||| |||| ||||   |||||||||||||||||    
T  5808845 ttactacatcattgatagattaatttgtattgggttgatacttttagtctcaataacaactat 5808783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 31911226 - 31911087
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||| |||||||||||||| |||||||||  ||||| | || | ||||||| || || |||  ||||||||||| ||| ||||||||||  | | |||    
T  31911226 ttactatatgattgatagatttatttgtattaatttgatagtttcagtctcaacaataaatatagagaaaacttttataagaataaaaatttgctaaaca 31911127  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgca 213  Q
    ||||||| ||| | |||||| |  ||||| ||||||||||    
T  31911126 atagtcaaaaataaattaaacaaataatgagtttcttgca 31911087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 18881806 - 18881836
Alignment:
Q  157 taaaaattatcaagacaatagtcataaacat 187  Q
    |||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaacat 18881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 32415742 - 32415790
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaatta 51  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||    
T  32415742 aaataataaacattgagttaccccaaataaattaagttgtcaaaaatta 32415790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38173039 - 38173003
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttca 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38173039 ccaaataataaacattgagctaccccaaacaagttca 38173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 75 - 326
Target Start/End: Original strand, 21790669 - 21790922
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    ||||||||||||||||  ||| |||| ||||||||||| |||||||||||||||| ||| |||  |||||||||||| ||   |||||||||| |||||     
T  21790669 ttactacatgattgattaatttatttatattggtttgatacttccggtctcaatagcaattatagagaaaactttttaaacggtaaaaattattaagact 21790768  T
Q  174 atagtcataaacatattaaataggtaatgcgtttctt--gcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaa 271  Q
    ||||||||||||| || |||| |  |||| |||| ||  ||| ||||||||||| ||||| ||| ||||||||||||||||||| || ||||| ||||||    
T  21790769 atagtcataaacaaataaaatggacaatgagttttttttgcaaataacctatttatttac-ttggaaaagacattattaatctagttagtaaacaatcaa 21790867  T
Q  272 ttatggataaaattgacttcttaaaacacattttaaccaacttttctaaatacct 326  Q
    ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||    
T  21790868 ttatggacaaaattgacttcttaaaatgcattttacccaacttttctaaatacct 21790922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 54166210 - 54165895
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcattt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||| ||               |||||||||||||||||||||   ||    
T  54166210 ccaaataataaacattgagctacctcaaacaagttcagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattttatt 54166111  T
Q  101 gtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggta 199  Q
     ||||||||||| |||| | || |||||||||| |||  | |||||||||| || |||||||||||||||||||||| ||||||| | ||||||| |  |    
T  54166110 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggaca 54166011  T
Q  200 atgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||| |||| ||||| |||||||||| ||||||||||||||| ||||||||||||||     |||    ||||||||||| |||||||| ||||| ||| |    
T  54166010 atgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggaaaaaattgatttcttgaaata 54165916  T
Q  300 cattttaaccaacttttctaa 320  Q
    ||||||  |||||||||||||    
T  54165915 cattttgtccaacttttctaa 54165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 257
Target Start/End: Original strand, 48841086 - 48841262
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 174  Q
    |||||||| ||||||| |||| |||||||||||||||| ||||||| ||||||||||||     ||||| |||||| || ||||||||||||||||||||    
T  48841086 ttactacaagattgatggatttatttgtattggtttgatacttccgatctcaataacaag----agaaacctttttcaacaataaaaattatcaagacaa 48841181  T
Q  175 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
      |||||| ||| ||||||| | ||||| |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  48841182 --gtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 48841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 48861905 - 48862087
Alignment:
Q  76 tactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaa 174  Q
    ||||||| |||||||||||| |||||||||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||||||||||||    
T  48861905 tactacaagattgatagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaa 48862004  T
Q  175 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
    ||||| || ||| |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  48862005 tagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 48862087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 323
Target Start/End: Complemental strand, 8745871 - 8745635
Alignment:
Q  87 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 185  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||| ||  ||||  |||||| || |||||||||||||||||||||| ||||| ||    
T  8745871 tgatagatttatttgtattggtttgatactcccgatctcaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatattcatagac 8745772  T
Q  186 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 285  Q
    | ||||||| |  |||| ||||||| |  ||||||||||| ||||||||  ||||||||||||||||||||| | ||||||  ||||||| ||| |||||    
T  8745771 aaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacattattaatctattat-taaataggcaattattgatgaaatt 8745673  T
Q  286 gacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |  ||||  |||||||||||  ||||| ||||||||||    
T  8745672 gggttctcgaaacacattttgcccaacgtttctaaata 8745635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 17816149 - 17815906
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||||||| |||||||||| || ||||||||||||  ||||||  ||| ||||||||||||  ||||||||| || || |||||||||||||||||||    
T  17816149 ttactacatgtttgatagatttatatgtattggtttggtacttccaatcttaataacaactatagagaaaacttattcaacaataaaaattatcaagaca 17816050  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcaga-taac---ctatttgtttacattgaaaaagacattattaatctattttgtaaataatc 269  Q
     ||||         ||| ||| || |||| |||||||||| | ||||   ||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  17816049 gtagt---------attcaatgggcaatgagtttcttgcaaaataacttactatttgtttacattaaaaaa-acattattaatctattttgtaaacaatc 17815960  T
Q  270 aattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    || ||||||||||||||||||||| |||| ||||||  ||||||||| ||||||    
T  17815959 aactatggataaaattgacttctttaaacgcattttgcccaacttttttaaata 17815906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 323
Target Start/End: Complemental strand, 6016882 - 6016763
Alignment:
Q  204 gtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 303  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||| ||| || |||  ||||    
T  6016882 gtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatggataaaattggcttattgaaatgcatt 6016783  T
Q  304 ttaaccaacttttctaaata 323  Q
    ||| ||||||||| ||||||    
T  6016782 ttacccaacttttttaaata 6016763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 22786054 - 22786172
Alignment:
Q  205 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 304  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||   || |||||||||||||||| |||||| |||  |||||    
T  22786054 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatggataaaattggcttcttgaaatgcattt 22786153  T
Q  305 taaccaacttttctaaata 323  Q
    || ||||||||| ||||||    
T  22786154 tacccaacttttttaaata 22786172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 43892668 - 43892522
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  43892668 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgt 43892569  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
    | |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  43892568 gcaatgagtttcttgcaaataacctatttatttacatttgaaaagac 43892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 2407181 - 2407300
Alignment:
Q  205 tttcttgcagataacctatttgtttacattg-aaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 303  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||| ||||||||||||||||| |||  ||||    
T  2407181 tttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattgataaaattgacttcttgaaatgcatt 2407280  T
Q  304 ttaaccaacttttctaaata 323  Q
    |||  |||||||| ||||||    
T  2407281 ttactcaacttttttaaata 2407300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 256
Target Start/End: Original strand, 52628216 - 52628371
Alignment:
Q  102 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 200  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||| | |||||||    ||    
T  52628216 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaa 52628315  T
Q  201 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 256  Q
    || |||| ||||| |||||||||| |||||||||| |||| | |||||||||||||    
T  52628316 tgagtttattgcaaataacctattagtttacattggaaaatatattattaatctat 52628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 287
Target Start/End: Complemental strand, 46694050 - 46693934
Alignment:
Q  171 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 270  Q
    |||||||||||||||| |||||| |  ||||| |||||||||| || |  ||||| |||| |||||||| ||| ||||||||||||||| || | |||||    
T  46694050 acaatagtcataaacaaattaaacaaataatgagtttcttgcaaatgaattatttatttatattgaaaaggacgttattaatctattttatatacaatca 46693951  T
Q  271 attatggataaaattga 287  Q
    |||||  ||||||||||    
T  46693950 attataaataaaattga 46693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 11950600 - 11950686
Alignment:
Q  237 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||||||||| |||||||||||||||||||| ||| ||||| || |||||| |||||| || || |||||  ||||||||||||||||    
T  11950600 aaaagacatcattaatctattttgtaaatagtcatttatgaattaaattggcttcttgaagcagattttgtccaacttttctaaata 11950686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 5476447 - 5476358
Alignment:
Q  209 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 298  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| |||||||    
T  5476447 ttgcaaataacttatttgtttacattgaaaaagacattattagtgtatttagtatgcaatcaattctgaagaaaattaactttttaaaac 5476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 16608454 - 16608373
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    |||||||||| |||||||||||||| ||||||| ||| || || | |||| ||| ||||||||||||||||||||||||||||||    
T  16608454 ataacctatt-gtttacattgaaaa-gacattagtaaccttttat-taaacaatgaattatggataaaattgacttcttaaaaca 16608373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 8762661 - 8762618
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattt 258  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  8762661 ataacttatttgtttacattgaaaaagacattattagtctattt 8762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48861832 - 48861886
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  48861832 ccaaataataaacattaagctaccccaaataagtttagttg-caaaaattagcata 48861886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 42319035 - 42318948
Alignment:
Q  209 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||| ||||| ||||| ||||||||||||  || ||||||||||||||| ||||| |   |||||||||||||| |||||| ||||||    
T  42319035 ttgcaaataacatatttatttacattgaaag-gatattattaatctatttagtaaacataaaattatggataaaagtgactttttaaaa 42318948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 8762800 - 8762706
Alignment:
Q  85 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 178  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  8762800 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 8762706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2407103 - 2407143
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttg 41  Q
    |||||||||||||||||||||||| ||| ||| ||||||||    
T  2407103 ccaaataataaacattgagctaccccaactaaattcagttg 2407143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6016959 - 6016919
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttg 41  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  6016959 ccaaataataaacattgagctaccccaaacaaattcagttg 6016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22785976 - 22786016
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttg 41  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  22785976 ccaaataataaacattgagctaccccaaacaaattcagttg 22786016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 75 - 323
Target Start/End: Original strand, 47367775 - 47368025
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaat-aaaaattatcaagac 172  Q
    ||||||||||||||||||||| ||||||| |||||||  | || | ||| |||||||||||||  ||||||||||||||| ||| ||||||||||||| |    
T  47367775 ttactacatgattgatagatttatttgtaatggtttggtattttcagtcgcaataacaactatagagaaaacttttttaacaattaaaaattatcaaggc 47367874  T
Q  173 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 272  Q
    |||||| |||||||||| |||  || |||| |||||||||| |||  ||| |||||||||||| | |||||||||| | | ||||||||||| ||||||     
T  47367875 aatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtctaattgtttacattggagaagacattatcattatattttgtaaacaatcaaa 47367974  T
Q  273 tatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||||||| ||| || |||||||||||  ||||||||| ||||||    
T  47367975 tatggataaaattgcctttttgaaacacattttgtccaacttttttaaata 47368025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 1600755 - 1600504
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||||| |||||||||||| ||||| ||||||||||  ||| |||||||||||||||| ||  ||||| | |||| || |||||||||||||||||||    
T  1600755 ttactacaagattgatagatttatttgcattggtttgatgctttcggtctcaataacaacaatagagaaacccttttcaacaataaaaattatcaagaca 1600656  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaaga---cattattaatctattttgtaaataatca 270  Q
    ||||||||| ||| ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||   ||| ||||||||||| | ||||||| ||    
T  1600655 atagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagaaatcatcattaatctattat-taaataaaca 1600557  T
Q  271 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||||| ||| ||||||  ||| | ||||  |||||| ||||| ||||||||||    
T  1600556 attattgatgaaattgggttcctgaaacgtattttacccaacatttctaaata 1600504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 23614476 - 23614729
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgt 102  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||               | |||||| |||||||||||| ||||||    
T  23614476 aaataataaacattgagctacctcaaataagtttagttgc-aaaaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgt 23614573  T
Q  103 attggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaat 201  Q
    |||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||| ||||||||||||| || ||| |||||| ||  |||    
T  23614574 attggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaat 23614673  T
Q  202 gcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
    | |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  23614674 gagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 23614729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 323
Target Start/End: Original strand, 11142599 - 11142835
Alignment:
Q  87 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 185  Q
    ||||||||| |||||||||||||||| ||| ||| ||| ||||||||| ||  ||||  |||||| || |||||||||||||||||||||| | ||| ||    
T  11142599 tgatagatttatttgtattggtttgatactcccgatctaaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatatttatagac 11142698  T
Q  186 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 285  Q
    | ||||||| |  |||| |||||||||  ||||||||||  ||||||||  ||||||||||||||||||||| | |||| |  ||||||| |||||||||    
T  11142699 aaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacattattaatctattat-taaacagacaattattgataaaatt 11142797  T
Q  286 gacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |  ||||| |||||||||||| ||||| ||||||||||    
T  11142798 gggttcttgaaacacattttacccaacgtttctaaata 11142835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 323
Target Start/End: Original strand, 44961379 - 44961613
Alignment:
Q  89 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 187  Q
    ||||||| ||||| |||| |||||  ||| |||||||||||||||| ||  ||||| | |||| || | |||||||||||||||||||||||||| |||     
T  44961379 atagatttatttgcattgatttgatgctttcggtctcaataacaacaatagagaaacccttttcaacagtaaaaattatcaagacaatagtcatagacaa 44961478  T
Q  188 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 287  Q
    ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||||| ||||||||||| | ||||||| | ||||| ||| |||||||    
T  44961479 attaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatcattaatctattat-taaataaacgattattgatgaaattga 44961577  T
Q  288 cttcttaaaacacattttaaccaacttttctaaata 323  Q
     ||| | ||||  |||||| ||||| ||||||||||    
T  44961578 attcctgaaacgtattttacccaacatttctaaata 44961613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 75 - 304
Target Start/End: Complemental strand, 10406355 - 10406128
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 174  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||  |||||  ||||| || ||||| ||||||||||||||    
T  10406355 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaacta-gagaaacttttttcaacaataataattatcaagacaa 10406257  T
Q  175 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatta 274  Q
    |||||||  ||| | ||||| |  | || |||||||||| ||||||||||| ||||||||  |||| |||||||||||||||| | |||| | |||||||    
T  10406256 tagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacattattaatctattat-taaacagtcaatta 10406158  T
Q  275 tggataaaattgacttcttaaaacacattt 304  Q
    | ||| ||||||  ||||| |||| |||||    
T  10406157 ttgatgaaattgggttcttgaaacgcattt 10406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 10177812 - 10178042
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaactttttt-aaaaataaaaattatcaagac 172  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| ||||||||||||| | |||| |||||||||| || ||||||||||||||||||    
T  10177812 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaac-aatagagaaacttttttcaacaataaaaattatcaagac 10177910  T
Q  173 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 272  Q
    |||||||||  ||| | ||||| |    || |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| | |||||    
T  10177911 aatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacattattaatctattat-taaacagtcaat 10178009  T
Q  273 tatggataaaattgacttcttaaaacacatttt 305  Q
    ||| ||| ||||||| ||||| |||| ||||||    
T  10178010 tattgatgaaattgagttcttgaaacgcatttt 10178042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 286
Target Start/End: Original strand, 19313298 - 19313507
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 172  Q
    |||||||| ||||||| |||  |||||||||  ||||| ||| ||| ||||||||||||| || ||| |||||||||| || ||||||||||||||| ||    
T  19313298 ttactacaagattgatggat--atttgtatttctttgatactcccgatctcaataacaacaat-agagaaacttttttcaacaataaaaattatcaaaac 19313394  T
Q  173 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 272  Q
    |||||||||| ||| ||||||||| || || |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| | |||||    
T  19313395 aatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacattattaatctattat-taaacagtcaat 19313493  T
Q  273 tatggataaaattg 286  Q
    ||| ||| ||||||    
T  19313494 tattgatgaaattg 19313507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 79 - 323
Target Start/End: Complemental strand, 52111177 - 52110950
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagt 178  Q
    ||||| ||||||| ||| |||||||||||||||| |||| || |||||||||||||||  |||||||| ||| || |||||||||||||| || |||| |    
T  52111177 tacataattgataaatttatttgtattggtttgatactttcgatctcaataacaacta-gagaaaactatttcaacaataaaaattatcatgaaaataat 52111079  T
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 278  Q
    |||||||| ||||||||                || | |||||||||||||| |||| |||||||||||||||| | ||| ||||| | ||||||||| |    
T  52111078 cataaacaaattaaata----------------catacaacctatttgtttatattggaaaagacattattaatttgtttagtaaaaagtcaattatgaa 52110995  T
Q  279 taaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||| |||||||||||  |||||  ||||||||| ||||||    
T  52110994 taaaattggcttcttaaaacgtattttgtccaacttttttaaata 52110950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 15757676 - 15757822
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  15757676 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 15757775  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  15757776 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 15757822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 30950906 - 30950761
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||   ||||||||||    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  30950806 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 30950761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 10620063 - 10620209
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  10620063 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 10620162  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||| | ||||||||||| ||||||||  |||||||    
T  10620163 acaatgagtttcttgaaaataacctatttatttacatttgaaaagac 10620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 29799150 - 29799018
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 278  Q
    |||||||| ||||||| | || || ||||||| || |||||||||||||||||||||  |||||||||||||||| |||| |||||| ||||| ||| ||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  279 taaaattgacttcttaaaacacattttaaccaa 311  Q
    |||||||| |||||| |||  ||||||| ||||    
T  29799050 taaaattggcttcttgaaatgcattttacccaa 29799018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 24134376 - 24134466
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    |||||||| ||||| |||||||||||||| ||||| |||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||    
T  24134376 ttcttgcaaataacatatttgtttacatttaaaaa-acattaataatctttttatcaaatagtcaattatggataaaattgacttcttaaaa 24134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 27696583 - 27696493
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  27696583 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 27696493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 28403126 - 28403185
Alignment:
Q  199 aatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattt 258  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28403126 aatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctattt 28403185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 40268669 - 40268759
Alignment:
Q  209 ttgcagataacctatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaac 298  Q
    ||||| ||||| || ||||||| ||| ||||||||||||||| ||||||||  |||| ||| |||||| ||||||||||||||||||||||    
T  40268669 ttgcaaataacttacttgtttagatttaaaaagacattattagtctattttaataaacaattaattatagataaaattgacttcttaaaac 40268759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 33240918 - 33240850
Alignment:
Q  218 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 286  Q
    ||||||| |||||||||| |||| |||||||||||||||||  |||| | |||||||||||||||||||    
T  33240918 acctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattg 33240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 21972478 - 21972576
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 322  Q
    |||| |||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| ||||||||||| || ||||  |||| |||| |||||    
T  21972478 tttgcttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaatacgttttgcccaaattttttaaat 21972575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 46515655 - 46515753
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 322  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | ||||| |||||||||||||| ||||||||| || ||||  |||| |||| |||||    
T  46515655 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaatcatggataaaattgagttcttaaaatacgttttgcccaaattttttaaat 46515752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 29358495 - 29358572
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaa 295  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||||||||||||||| |||||||||||    
T  29358495 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaagaatcaattatggataaaagtgacttcttaa 29358572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29357175 - 29357230
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||| ||||||||||| |||||||||| ||||||| ||||||| ||||    
T  29357175 ccaaataataaatattgagctaccccaaataagtttagttgccgaaaattaacata 29357230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29799202 - 29799147
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    ||||||||||||||||||| |||  ||||||| ||||||||||||||| |||||||    
T  29799202 ccaaataataaacattgagttactccaaataaattcagttgccaaaaactagcata 29799147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 297
Target Start/End: Complemental strand, 10989278 - 10989196
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| ||||||    
T  10989278 ataacttatttgtttacattgaaaaagacattattagtatatttagtatgcaatcaattctgaagaaaattaactttttaaaa 10989196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 8262067 - 8262168
Alignment:
Q  139 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 238  Q
    |||| |||||||||| |||||||||| | |  |||||||| | ||||| |||||| || |||||  ||||||| | ||||| |||||| |||||||||||    
T  8262067 agaagacttttttaagaataaaaattgttagaacaatagttagaaacaaattaaacagataatgaatttcttgtaaataacttatttgcttacattgaaa 8262166  T
Q  239 aa 240  Q
    ||    
T  8262167 aa 8262168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 33322972 - 33322903
Alignment:
Q  221 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgactt 290  Q
    |||||||||| |||| |||||| |||| || ||||||| ||| | ||||||||||| |||||||||||||    
T  33322972 tatttgtttatattgtaaaagaaattactagtctatttagtatacaatcaattatgaataaaattgactt 33322903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 33241477 - 33241370
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 173  Q
    ||||||||| | | ||||||| |||| ||||| ||||| ||||   ||||||| ||||| |||  |||||||||||  || |||||||||||||||||||    
T  33241477 ttactacataactaatagatttatttatattgatttgatacttttagtctcaacaacaattatagagaaaacttttc-aacaataaaaattatcaagaca 33241379  T
Q  174 atagtcata 182  Q
    |||||||||    
T  33241378 atagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 5184741 - 5184669
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||||||||||||||| ||||||| ||||||||||  |||  | ||||||||| |||||||||||| |||||||    
T  5184741 tttgtttacattgaaaa-gacattaataatctatttattaac-agtcaattatgcataaaattgactccttaaaa 5184669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 323
Target Start/End: Complemental strand, 16908815 - 16908575
Alignment:
Q  82 atgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtca 180  Q
    ||||||||||||||  ||| ||||||||||| |||||||||||||||||||| |||  |||||||||||  ||  ||||||||||| ||||||||||| |    
T  16908815 atgattgatagatttgtttatattggtttgatacttccggtctcaataacaattatagagaaaacttttc-aacgataaaaattattaagacaatagtta 16908717  T
Q  181 taaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggata 280  Q
    |||| | ||||||| |  |||  ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||    
T  16908716 taaataaattaaatggacaata-gtttctttcaagtaacctatttgtttacattgaaaaatacattattaatctatttagtaaacagtcaattatggata 16908618  T
Q  281 aaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    || ||| ||| || |||  ||||||| ||||||||||||||||    
T  16908617 aatttggctttttgaaatgcattttacccaacttttctaaata 16908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 41640237 - 41639989
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagaca 173  Q
    |||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| || ||||||||| ||||||| |    
T  41640237 ttactacaagattgatagatttatttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagaaa 41640138  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 273  Q
    ||||||||| ||| |||||||    |||| |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| || |||||    
T  41640137 atagtcatagacaaattaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacattattaatctattat-taaacaagcaatt 41640039  T
Q  274 atggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    || ||| ||||||| ||||| ||||  |||||  ||||| ||||||||||    
T  41640038 attgatgaaattgagttcttgaaacgtattttgtccaacgtttctaaata 41639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 287
Target Start/End: Complemental strand, 40361197 - 40360994
Alignment:
Q  83 tgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcat 181  Q
    ||||||||||||| || | ||| ||||||  ||||| |||||||| ||||  |||  |||||||||||| || || |||||||||||| | ||||||||     
T  40361197 tgattgatagatttatctttatcggtttggtacttctggtctcaacaacatttatagagaaaactttttcaacaacaaaaattatcaacaaaatagtcag 40361098  T
Q  182 aaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataa 281  Q
      ||  |||||||||| |||| |||||||||| |||||||||||||||| ||   |||||||||||||||||||||||||||| | ||||||||||||||    
T  40361097 ggac--attaaataggaaatgagtttcttgcaaataacctatttgtttagatcataaaagacattattaatctattttgtaaacagtcaattatggataa 40361000  T
Q  282 aattga 287  Q
    ||||||    
T  40360999 aattga 40360994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 17769122 - 17768976
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17769122 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17769023  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  17769022 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 17768976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 13517498 - 13517644
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  13517498 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 13517597  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  13517598 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 13517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 34034071 - 34034183
Alignment:
Q  145 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 244  Q
    |||||| || ||||||||||||||||| |||||||||| ||| ||||||| |  |||| |||||||||| ||||| ||||| ||||||||  ||||||||    
T  34034071 ctttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagaca 34034170  T
Q  245 ttattaatctatt 257  Q
    |||||||||||||    
T  34034171 ttattaatctatt 34034183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 311
Target Start/End: Complemental strand, 40528255 - 40528123
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 278  Q
    |||||||| ||||| | | || || ||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||| ||| ||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  279 taaaattgacttcttaaaacacattttaaccaa 311  Q
    |||||||| |||||| |||  ||||||| ||||    
T  40528155 taaaattggcttcttgaaatgcattttacccaa 40528123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 282
Target Start/End: Complemental strand, 19949018 - 19948812
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 174  Q
    ||||||||| |||||||| || ||||||| |||||||  | || | |||  |||||||||||| ||||||     |||| ||| ||||||||||||||||    
T  19949018 ttactacataattgataggtttatttgtaatggtttggtattttcagtcgaaataacaactat-agaaaaaaaaattaacaattaaaattatcaagacaa 19948920  T
Q  175 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatta 274  Q
    ||||||||||| |||||||| |  ||||  ||||||||| |||| ||| |||||||||||| | || | ||||||| || ||||||||||  || |||||    
T  19948919 tagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacattggagaaaatattattattccattttgtaaacgattaatta 19948820  T
Q  275 tggataaa 282  Q
    ||||||||    
T  19948819 tggataaa 19948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 315
Target Start/End: Original strand, 7008942 - 7009042
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||  |||||||||||||||  ||||| ||||| |||||  |||||||    
T  7008942 ataacctatttgtgtacattggaaaaggcattattaatctattttgtaaacaatcgtttatggataaaattggtttcttgaaacagattttgtccaactt 7009041  T
Q  315 t 315  Q
    |    
T  7009042 t 7009042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 304
Target Start/End: Complemental strand, 17696012 - 17695850
Alignment:
Q  142 aaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaa 240  Q
    |||||||||| || |||||||||||||||||||||||||||  ||| | ||||| |  | || |||||||||| ||||| ||||| ||||||||  ||||    
T  17696012 aaacttttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaa 17695913  T
Q  241 gacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 304  Q
     |||||||||||||||| | |||| | |||||||| ||| ||||||  ||||| |||| |||||    
T  17695912 aacattattaatctattat-taaacagtcaattattgatgaaattgggttcttgaaacgcattt 17695850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 323
Target Start/End: Complemental strand, 6536689 - 6536537
Alignment:
Q  171 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 270  Q
    |||||||||  ||||| |||||| |  ||| | |||||||||| || || |||||||||| ||||||||  |||||| || |||||||| || | |||||    
T  6536689 acaatagtcgaaaacaaattaaacatataacgagtttcttgcaaattacttatttgtttagattgaaaagaacattactagtctattttatatacaatca 6536590  T
Q  271 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||  |||||||| |||| ||||||||  || || ||||||||||||||||    
T  6536589 attataaataaaattcactttttaaaacatgttgtacccaacttttctaaata 6536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 42353206 - 42353304
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 322  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||||||||| ||||| || ||||  |||| |||| |||||    
T  42353206 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcataaaatacgttttgcccaaattttttaaat 42353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 14521679 - 14521766
Alignment:
Q  209 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||| ||||| | |||||||||||||||||| |||||| |||| |||||  |||| | ||||||||||||||||| ||||||||||||    
T  14521679 ttgcaaataacttgtttgtttacattgaaaaa-acattaataatatatttattaaacagtcaattatggataaaatagacttcttaaaa 14521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 3498517 - 3498434
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 298  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||| |||   |||||||| || | |||||| |||| |||||||    
T  3498517 ataacttatttgtttacattgaaaaagacaatattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaac 3498434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 22099030 - 22099088
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaa 133  Q
    ||||||||||||||||||||  |||| ||||||||||| |||| |  ||||||||||||    
T  22099030 ttactacatgattgatagatatatttatattggtttgatactttcaatctcaataacaa 22099088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 34033998 - 34034043
Alignment:
Q  89 atagattcatttgtattggtttgaaacttccggtctcaataacaac 134  Q
    ||||||| |||||||||||||||| |||| |||||| |||||||||    
T  34033998 atagatttatttgtattggtttgatactttcggtcttaataacaac 34034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 40528305 - 40528252
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||||||||||||| |||  || |||||||||| |||| |||||||    
T  40528305 aaataataaacattgagctaccccaagcaaattcagttgccgaaaactagcata 40528252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 19949089 - 19949037
Alignment:
Q  4 aataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||||||||||  ||||||||||| ||||| | ||||||| ||||    
T  19949089 aataataaacattgagctatttcaaataagtttagttgtcgaaaattaacata 19949037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 81 - 323
Target Start/End: Original strand, 4435175 - 4435417
Alignment:
Q  81 catgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtc 179  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||  ||||| ||||||||| ||||||||||||| |||||||||||    
T  4435175 catgattgatagatttatttgtatttgtttgatacttccggtctcaataacaattatagagaaaccttttttaacaataaaaattatctagacaatagtc 4435274  T
Q  180 ataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat 279  Q
    ||| | |  || ||| |  |||| |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| |  |||||||||||    
T  4435275 atagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagacaattatggat 4435373  T
Q  280 aaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
     ||||||| ||||| |||  ||||||  ||||| ||||||||||    
T  4435374 gaaattgagttcttgaaatgcattttgcccaacgtttctaaata 4435417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 42799275 - 42799108
Alignment:
Q  157 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 256  Q
    |||||||| | ||||||||||||||||||| ||||||| |  | || |||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  257 tttgt-aaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    || || |||| |||||||||||||||||||| |||||| |||  ||||||| ||||||||| ||||||    
T  42799175 ttagtaaaatgatcaattatggataaaattggcttcttgaaatgcattttatccaacttttttaaata 42799108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 45656017 - 45655899
Alignment:
Q  205 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 304  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| ||||||||| ||| || |||  |||||    
T  45656017 tttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaataaaattggctttttgaaatgcattt 45655918  T
Q  305 taaccaacttttctaaata 323  Q
    || ||||||||| ||||||    
T  45655917 tacccaacttttttaaata 45655899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 287
Target Start/End: Complemental strand, 21746285 - 21746137
Alignment:
Q  139 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 238  Q
    ||||||| ||||||| |||||||||| | || |||||||||||||||| |||||| ||||| |  ||||| ||||  |||| ||||| ||||||||||||    
T  21746285 agaaaacgtttttaagaataaaaattgttaaaacaatagtcataaacaaattaaacaggtagtaagtttcatgcaagtaacttatttatttacattgaaa 21746186  T
Q  239 aagacattattaatctattttgtaaataatcaattatggataaaattga 287  Q
    | |||||||||| ||||||| ||| | ||||||||| | ||||||||||    
T  21746185 atgacattattagtctatttagtatacaatcaattaagaataaaattga 21746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 16546354 - 16546499
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || ||||||| || ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  16546454 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 16546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 39070267 - 39070154
Alignment:
Q  204 gtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacat 302  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   |||||||||||||||||||  ||||| |||  |||    
T  39070267 gtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcat 39070168  T
Q  303 tttaaccaactttt 316  Q
    ||||  ||||||||    
T  39070167 tttacacaactttt 39070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 14802774 - 14802671
Alignment:
Q  221 tatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttcta 319  Q
    ||||||||||||||  |||| |||||||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||| | ||||  ||||||||||||    
T  14802774 tatttgtttacattagaaaaaacattattaatctatttttgtaaacaatcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttcta 14802675  T
Q  320 aata 323  Q
    ||||    
T  14802674 aata 14802671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 26180634 - 26180689
Alignment:
Q  139 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat 194  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  26180634 agaaaacttttttaacaattaaaactatcaagacaatagtcataaacatattaaat 26180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 299
Target Start/End: Complemental strand, 35524747 - 35524657
Alignment:
Q  209 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  35524747 ttgcaaataacttatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 35524657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 37614591 - 37614731
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttac---attgaaaaagacattattaatctattttgtaaataatcaattat 275  Q
    |||||||| |||||||||  | ||  ||||||||| |||||||||||||||||   |||| |||||||||||||||||||||| |||||     ||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaacggctaattat 37614690  T
Q  276 ggataaaattgacttcttaaaacacattttaaccaactttt 316  Q
    | ||||| ||| |||||| |||  ||||||| |||||||||    
T  37614691 gaataaatttggcttcttgaaatgcattttacccaactttt 37614731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 26180505 - 26180560
Alignment:
Q  2 caaataataaacattgagctacctcaaataagttcagttg-ccaaaaattagcata 56  Q
    ||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||    
T  26180505 caaataataaatattgagctacctcaaacaagtttagttgtccaaaaattagcata 26180560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16546302 - 16546357
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    ||||||||||||||||||||||||  ||| || |||||||||| ||||||| ||||    
T  16546302 ccaaataataaacattgagctaccctaaacaaattcagttgccgaaaattaacata 16546357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 18160019 - 18159944
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaactttt 149  Q
    ||||||||||||||||||||| |||||||||  ||||| || | ||| ||||||||||| |||  |||||||||||    
T  18160019 ttactacatgattgatagatttatttgtattcatttgataccttcggcctcaataacaaatatagagaaaactttt 18159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 18161193 - 18161103
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaaaataaaaatta 165  Q
    ||||||||||||||||||||| || |||||| |||||| || | ||| ||||||||||| || |||| ||||||||  || |||||||||||    
T  18161193 ttactacatgattgatagatttatctgtattcgtttgataccttcggcctcaataacaaata-tagagaaacttttacaacaataaaaatta 18161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 8230347 - 8230253
Alignment:
Q  85 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 178  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  8230347 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 8230253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 35524884 - 35524790
Alignment:
Q  85 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 178  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  35524884 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 35524790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 18308106 - 18308191
Alignment:
Q  81 catgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaatta 165  Q
    ||||||||||||||| ||||||||| |||||| || | ||  ||||||||||| |||  |||||||||||  || |||||||||||    
T  18308106 catgattgatagatttatttgtattcgtttgatacattcgacctcaataacaaatatagagaaaacttttacaacaataaaaatta 18308191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 16152135 - 16152390
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcattt 100  Q
    |||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||               | |||||| |||||||||||| ||||    
T  16152135 ccaaataataaacattgagctaccccaaataagtttagttgc-aaaaattagcataaataataaagtaaaaaact-actacaagattgatagatttattt 16152232  T
Q  101 gtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggta 199  Q
    |||||||||||| | || |||||||||||||||| || | |||| |||||| || || |||||||||||||||||||||| || ||| |||||| ||  |    
T  16152233 gtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagaca 16152332  T
Q  200 atgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
    ||| |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  16152333 atgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctatt 16152390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 305
Target Start/End: Complemental strand, 17653133 - 17652926
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| ||||||  ||||||||||||| || | | ||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17653133 tttgtattggtttgatacttcccatctcaataacaacaataaagtaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17653034  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 296  Q
      |||| |||||||||| ||||||||||| || |||||  ||||||||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  17653033 acaatgagtttcttgcaaataacctatttattaacatttgaaaagacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 17652935  T
Q  297 acacatttt 305  Q
    ||| |||||    
T  17652934 acatatttt 17652926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 20843258 - 20843140
Alignment:
Q  205 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 304  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||| |||||| |||  |||||    
T  20843258 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatggataaaattggcttcttgaaatgcattt 20843159  T
Q  305 taaccaacttttctaaata 323  Q
    || ||||||||| ||||||    
T  20843158 tacccaacttttttaaata 20843140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 52403338 - 52403230
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 52403239  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  52403238 ttttaaata 52403230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 21295932 - 21296078
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||| ||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  21295932 tttgtattggtttgatacttcccgtctcagtaacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 21296031  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21296032 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 46823804 - 46823950
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  46823804 tttgtattggtttgatactttccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 46823903  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  46823904 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 46823950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 11028048 - 11027932
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    |||| |||||||||||| |||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| ||||| ||||||| ||||||||||||    
T  11028048 tacaagattgatagatttatttgtattggtttgatacttccagtctcaataacaacaataaagaaacctttttcaaaaacaaaaattctcaagacaatag 11027949  T
Q  178 tcataaacatattaaat 194  Q
    ||||  ||| |||||||    
T  11027948 tcatggacaaattaaat 11027932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 320
Target Start/End: Original strand, 29648402 - 29648564
Alignment:
Q  160 aaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 259  Q
    |||||||||||||||||||||||| || ||||||  |  |||  |||| ||||| || |  | |||||||| ||||||||||| ||||||||| |||||     
T  29648402 aaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattattaatttattta 29648501  T
Q  260 gtaaataatca--attatggataaaattgacttcttaaaacacattttaaccaacttttctaa 320  Q
    ||||| |||||  |||||||||||||||||||||||||||  ||||||   ||||||||||||    
T  29648502 gtaaacaatcaatattatggataaaattgacttcttaaaatccattttgctcaacttttctaa 29648564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 38171472 - 38171566
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaa----ttatggataaaattgacttcttaaaacacatttt 305  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||| ||||||    ||||||||||||||||||| ||||||||||||||    
T  38171472 ataacctatttgtgtaaattagaaaagacattattaatctattttgtaaacaatcaatcatttatggataaaattgactttttaaaacacatttt 38171566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 40763813 - 40763958
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  40763913 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 40763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 52403449 - 52403345
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagt 178  Q
    ||||| ||||||||||| |||||||||||||||   |||||  |||||||||||| ||| ||| |||||||| || |||||||| |||||||||||||||    
T  52403449 tacatcattgatagatttatttgtattggtttggttcttccactctcaataacaattataagagaactttttcaacaataaaaactatcaagacaatagt 52403350  T
Q  179 cataa 183  Q
    |||||    
T  52403349 cataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 11906655 - 11906547
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||||||||  ||| ||||| |||||||||   |||| |||||||||| | |||||||    
T  11906655 ataatctatttgtgtacattgaaaaatatattattaatctattttgtaaattgtcatttatgaataaaattgggctcttgaaacacatttcatccaactt 11906556  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  11906555 ttttaaata 11906547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 19795664 - 19795745
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  19795664 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 19795745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 11906760 - 11906662
Alignment:
Q  85 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 183  Q
    ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| ||| |||| || |||||||| ||||||||||||||||||||    
T  11906760 attgatagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaac-ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 37175495 - 37175588
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacac 300  Q
    |||||||| |||| |||||| |||||||| |||||||||||| ||||||||||  |||  | | |||||||||||||||| ||||||||||||||    
T  37175495 ttcttgcaaataatctatttatttacatt-aaaaagacattaataatctatttattaatcatttaattatggataaaattaacttcttaaaacac 37175588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 35062063 - 35062153
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| || |||||||||| |||||||||||||| ||| ||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  35062063 ttcttacaaataacctatt-gtttacattgaaaa-gacgttagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 35062153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 35106547 - 35106437
Alignment:
Q  218 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttc 317  Q
    |||| ||| ||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||||||||||||||| |  ||||  |||| ||||     
T  35106547 acctgtttctttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcttaaaatatgttttgcccaaattttt 35106450  T
Q  318 taaatacctttgt 330  Q
    ||||||| |||||    
T  35106449 taaatacttttgt 35106437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 40785772 - 40785851
Alignment:
Q  224 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 305  Q
    |||||||||||||||| ||||||| |||||| || | |||| ||| ||||||||||||||||||||||||||||||| ||||    
T  40785772 ttgtttacattgaaaa-gacattaataatcttttat-taaacaattaattatggataaaattgacttcttaaaacacgtttt 40785851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 3458173 - 3458029
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 278  Q
    |||||||| ||||||| | || || |||||||||| ||||| |||||||||||| || | |||||||||||||| ||| | |||||   |||||||| ||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  279 taaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||||||||  ||||| |||   |||||| ||||| ||| ||||||    
T  3458073 taaaattggtttcttgaaatttattttacccaacctttttaaata 3458029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 36312341 - 36312269
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  36312341 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 36312269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 11906838 - 11906792
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaat 49  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  11906838 aaataataaacattgagctacctcaaacaagtttagttgccaaaaat 11906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 29123490 - 29123552
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 137  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  29123490 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 29123552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 40785343 - 40785397
Alignment:
Q  2 caaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    ||||||||||| ||||||||||||||||||| ||  |||||| |||||| |||||    
T  40785343 caaataataaatattgagctacctcaaataaatttggttgccgaaaatttgcata 40785397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 52403518 - 52403473
Alignment:
Q  3 aaataataaacattgagctacctcaaataagttcagttgccaaaaa 48  Q
    ||||||||||||||||| ||||  ||||||||||||||| ||||||    
T  52403518 aaataataaacattgagataccctaaataagttcagttgtcaaaaa 52403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20843336 - 20843296
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttg 41  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  20843336 ccaaataataaacattgagctaccccaaacaaattcagttg 20843296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 31434187 - 31434259
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttt 150  Q
    ||||||||||||||||| || |||||  |||||  ||||||| | ||||||||||||||  ||||||||||||    
T  31434187 tacatgattgatagatttatatgtataagtttggtacttccgatgtcaataacaactatagagaaaacttttt 31434259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 87 - 323
Target Start/End: Complemental strand, 292425 - 292189
Alignment:
Q  87 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 185  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||||||  ||||  |||||| || |||||||||||||||||||||| ||||| ||    
T  292425 tgatagatttatttgtattggtttgatactcccgatctcaataacaactatagagaagcctttttcaacaataaaaattatcaagacaatattcatagac 292326  T
Q  186 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 285  Q
    | |||||||    |||| |||||||||  ||||||||||| |||| |||  |||||||| |||||||||||| | |||| |  ||||||| ||| |||||    
T  292325 aaattaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacactattaatctattat-taaacaggcaattattgatgaaatt 292227  T
Q  286 gacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |  ||||| |||||||||||  ||||| ||||||||||    
T  292226 gggttcttgaaacacattttgcccaacgtttctaaata 292189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 320
Target Start/End: Original strand, 34659370 - 34659535
Alignment:
Q  155 aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatct 254  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||| ||||| |||| ||||||||| ||||| |||||||||||||    
T  34659370 aataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttacatttaaaaatacattattaatct 34659469  T
Q  255 attttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaa 320  Q
    |||| ||||| | |||||||| ||||||||||  ||||| |||  ||||||  |||| ||||||||    
T  34659470 atttagtaaacactcaattatagataaaattggtttcttgaaatgcattttgtccaaattttctaa 34659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 305
Target Start/End: Complemental strand, 48609251 - 48609044
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  48609251 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 48609152  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 296  Q
      |||| |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  48609151 acaatgagtttcttgcaaataacctatttattaacatttgaaaacacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 48609053  T
Q  297 acacatttt 305  Q
    ||| |||||    
T  48609052 acatatttt 48609044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 75 - 323
Target Start/End: Complemental strand, 29716014 - 29715766
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagaca 173  Q
    |||||||| ||| |||||||| ||||||||| |||||| |||   | ||||||||||||| ||   ||||||||||| || |||||||||||||||||||    
T  29716014 ttactacaagatggatagatttatttgtatttgtttgatactcttgatctcaataacaacaatagaaaaacttttttcaacaataaaaattatcaagaca 29715915  T
Q  174 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 273  Q
    ||||||||| ||| ||||||| |    || |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || |||    
T  29715914 atagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctatt 29715816  T
Q  274 atggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    || ||| ||||||  ||||| |||| ||||||  ||||| ||||||||||    
T  29715815 attgatgaaattgggttcttgaaacgcattttgcccaacgtttctaaata 29715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 758835 - 758989
Alignment:
Q  104 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 202  Q
    ||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  758835 ttggtttgatacttcccgtctcaataacaacgataaagaaacctttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 758934  T
Q  203 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
     |||||||||| |||| |||||| ||||||||  |||||||||||||||||||||    
T  758935 agtttcttgcaaataatctatttatttacatttgaaaagacattattaatctatt 758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 46211817 - 46211663
Alignment:
Q  104 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 202  Q
    ||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  46211817 ttggtttgatactttccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 46211718  T
Q  203 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  46211717 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 46211663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 25592168 - 25592276
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 25592267  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  25592268 ttttaaata 25592276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 98 - 243
Target Start/End: Original strand, 39719879 - 39720025
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  39719879 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 39719978  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 243  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  39719979 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 39720025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 13465458 - 13465603
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  13465558 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 13465603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 83768 - 83617
Alignment:
Q  108 tttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat-aggtaatgcgt 205  Q
    ||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| ||||||  |   |||| ||    
T  83768 tttgatacttcccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagt 83669  T
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
    |||||| | ||||||||||| ||||||||  |||||||||||||||||||||    
T  83668 ttcttgtaaataacctatttatttacatttgaaaagacattattaatctatt 83617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 264
Target Start/End: Original strand, 37202722 - 37202908
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    |||||||| |||| ||| |||| ||||||||||| ||||| | ||||||||| || |||   ||||| ||||| || | ||||| |||| ||||||||||    
T  37202722 tacatgatggataaatttatttatattggtttgatacttctgctctcaataataattatggtgaaaattttttcaacattaaaagttattaagacaatag 37202821  T
Q  178 tcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaa 264  Q
    ||||||||| ||||||| |  | |  |||||||||| |||| ||||||||||||||   |||| ||||||||||||||||| |||||    
T  37202822 tcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacattattaatctatttagtaaa 37202908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 17949051 - 17949259
Alignment:
Q  84 gattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaa---ttatcaagacaatagtc 179  Q
    |||||||||| | |||||||||  ||||| |||| ||||||||| || || |||| | ||||| ||||||| ||||||||   || ||||||||||| ||    
T  17949051 gattgatagacttatttgtattaatttgacactttcggtctcaacaataaatattgataaaacatttttaagaataaaaaaaattgtcaagacaatactc 17949150  T
Q  180 ataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat 279  Q
    |  |||| || ||| || ||||| ||||||||||  |||| | ||||||||||||||| || ||||||| | |||||||  || | ||||||||||| ||    
T  17949151 a--aacaaatcaaacagataatgagtttcttgcaattaacttgtttgtttacattgaataatacattataagtctatttaatatacaatcaattatgaat 17949248  T
Q  280 aaaattgactt 290  Q
    |||||||||||    
T  17949249 aaaattgactt 17949259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 28491315 - 28491460
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  ||| |||| ||||||    
T  28491415 ataaaattggtttcttgaaatgcattttacacaaattttttaaata 28491460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 25592056 - 25592161
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    ||||| ||||||||||| |||||||||| ||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| |||||||| |||||    
T  25592056 tacatcattgatagatttatttgtattgatttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagataatag 25592155  T
Q  178 tcataa 183  Q
    ||||||    
T  25592156 tcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 4678061 - 4677983
Alignment:
Q  225 tgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 305  Q
    ||||||||||||||| ||||||| |||||| || | |||||||| ||||||||||||||||||||||||||||||| ||||    
T  4678061 tgtttacattgaaaa-gacattaataatcttttat-taaataattaattatggataaaattgacttcttaaaacacgtttt 4677983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 14047053 - 14047153
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14047053 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14047151  T
Q  315 tt 316  Q
    ||    
T  14047152 tt 14047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 215 - 316
Target Start/End: Original strand, 14357083 - 14357183
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14357083 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14357181  T
Q  315 tt 316  Q
    ||    
T  14357182 tt 14357183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 45855585 - 45855676
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || |  ||| ||| ||||||||||||||||||||||||||||||    
T  45855585 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttattaaaacaattaattatggataaaattgacttcttaaaaca 45855676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 27097112 - 27097174
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 137  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27097112 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 27097174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 27181191 - 27181129
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 137  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27181191 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 27181129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 37712936 - 37712998
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 137  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  37712936 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 37712998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 40253671 - 40253593
Alignment:
Q  221 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  40253671 tatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 40253593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Complemental strand, 20926878 - 20926806
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    |||||||||||| |||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  20926878 tttgtttacattaaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 20926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 37049134 - 37049224
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 297  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||| |||  |||| | | |||||   ||||||||| ||||||||||    
T  37049134 ttcttacaaataacctatttgtttacattg-aaaagacattattaatctttttattaaacagttaattacaaataaaattggcttcttaaaa 37049224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 25439623 - 25439575
Alignment:
Q  217 aacctatttgttt-acattgaaaaagacattattaatctattttgtaaa 264  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  25439623 aacctatttgttttacattggaaaagacattattaatctatttagtaaa 25439575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25591978 - 25592025
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaa 48  Q
    |||||||||||| ||||||||||  |||| ||||||||||||||||||    
T  25591978 ccaaataataaatattgagctactccaaacaagttcagttgccaaaaa 25592025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28491263 - 28491318
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||||||||||||| | |||| || |||||||||| ||||||| ||||    
T  28491263 ccaaataataaacattgagctatcccaaacaaattcagttgccgaaaattaacata 28491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 34659016 - 34659071
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataa 130  Q
    |||||||||||||||| |||| || | ||||||||||| |||| ||||||||||||    
T  34659016 ttactacatgattgatcgatttatatatattggtttgatactttcggtctcaataa 34659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 323
Target Start/End: Original strand, 37003822 - 37003919
Alignment:
Q  224 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    ||||||||||||||| |  ||||| |||||| ||   |||| |||||| |||| |||||||| | |||||||||||| ||||  ||||||||| ||||||    
T  37003822 ttgtttacattgaaaca--cattaataatcttttcattaaacaatcaactatgaataaaattaatttcttaaaacacgttttgcccaacttttttaaata 37003919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 34729775 - 34729935
Alignment:
Q  98 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 196  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||| ||||||||||||| |||  ||||||      
T  34729775 tttgtattggtttgatacttcccgtctcaataacaacaataacgaaaactttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgt 34729874  T
Q  197 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
      |||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  34729875 acaatgagtttcttgcaaataacctatttattaacatttaaaaagacattattaatctatt 34729935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 293
Target Start/End: Original strand, 29486376 - 29486588
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    ||||||||||||||||| |||| |||||||| || ||||| ||||||||||| |  |||  |||||||||||  || | |||||||||| ||||||||||    
T  29486376 tacatgattgatagatttatttatattggtt-gatacttctggtctcaataatagttatagagaaaacttttc-aagagtaaaaattattaagacaatag 29486473  T
Q  178 tcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    ||||||||| ||||| | |  |||  |||||||||| |||||||||||  ||||||||||||| | |||| |||||||||| |||||   ||||||||||    
T  29486474 tcataaacaaattaattggacaata-gtttcttgcaaataacctattttcttacattgaaaaatatattaataatctatttagtaaacggtcaattatgg 29486572  T
Q  278 ataaaattgacttctt 293  Q
    ||||| ||||||||||    
T  29486573 ataaatttgacttctt 29486588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 29363685 - 29363531
Alignment:
Q  104 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 202  Q
    ||||||||| |||| | |||||||||||||| |  | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  29363685 ttggtttgatactttccgtctcaataacaacgacaaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 29363586  T
Q  203 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 257  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  29363585 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 29363531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 263
Target Start/End: Original strand, 24428716 - 24428907
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 174  Q
    ||||||||||||||||| ||| |||| |||||||||||  |||| | ||| ||| |||      ||||||||||||  | | |||||||||| |||||||    
T  24428716 ttactacatgattgataaatttatttatattggtttgatccttcggatcttaatcacattgtagagaaaactttttgtacagtaaaaattattaagacaa 24428815  T
Q  175 tagtcataaacat---attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaa 263  Q
    ||||||||||||    ||||||| |  | || |||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  24428816 tagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatctatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 21216444 - 21216552
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||| || || ||||||||| | |||||    
T  21216444 ataacctacttgtatacatggaaaaagacattattaatctattttgtaaatagtcatttatggataaaatttgctttttgaatcacattttatctaactt 21216543  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  21216544 ttttaaata 21216552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 22956504 - 22956396
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 22956405  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  22956404 ttttaaata 22956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 23831888 - 23831996
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 23831987  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  23831988 ttttaaata 23831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 1780740 - 1780595
Alignment:
Q  179 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 277  Q
    |||||||| ||||||| |  | || |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  278 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 323  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  1780640 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 1780595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 22956616 - 22956511
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    ||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| ||||||||||||||    
T  22956616 tacatcattgatagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatag 22956517  T
Q  178 tcataa 183  Q
    ||||||    
T  22956516 tcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 23831776 - 23831881
Alignment:
Q  79 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatag 177  Q
    ||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| |||||||| || |||||||| ||||||||||||||    
T  23831776 tacatcattgatagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatag 23831875  T
Q  178 tcataa 183  Q
    ||||||    
T  23831876 tcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 31216346 - 31216241
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 314  Q
    ||||||||||||| ||||||| |||| |   ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||  ||||||     
T  31216346 ataacctatttgtgtacattggaaaata---tattaatctattttgtaaatagtcatttatggataaaattggcttcttgaaacacattttgtccaacta 31216250  T
Q  315 ttctaaata 323  Q
    || ||||||    
T  31216249 ttttaaata 31216241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 299
Target Start/End: Complemental strand, 8559969 - 8559888
Alignment:
Q  215 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  8559969 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 8559888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 31216459 - 31216353
Alignment:
Q  79 tacatgattgatagattcatttgtattgg-tttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaata 176  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| || |||  ||||||||||||  | | |||||| |||||||||||||    
T  31216459 tacatgattgatagatttatttgtattggttttgatacttccggttttaataataattatagagaaaactttttccacactaaaaactatcaagacaata 31216360  T
Q  177 gtcataa 183  Q
    |||||||    
T  31216359 gtcataa 31216353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 904073 - 903993
Alignment:
Q  223 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 305  Q
    ||||||||||||||||||  ||||| |||| |||||  ||||   |||||||||||||||||| ||||||||||| |||||||    
T  904073 tttgtttacattgaaaaa--cattaataatttatttattaaacggtcaattatggataaaatttacttcttaaaatacatttt 903993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 27673963 - 27674021
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaa 133  Q
    ||||||||  ||||||| ||| |||||||||||||||| |||| |||||||||||||||    
T  27673963 ttactacaaaattgatatatttatttgtattggtttgatactttcggtctcaataacaa 27674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 33224841 - 33224879
Alignment:
Q  261 taaataatcaattatggataaaattgacttcttaaaaca 299  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33224841 taaacaatcaattatggataaaattgacttcttaaaaca 33224879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22956693 - 22956645
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaat 49  Q
    |||||||||||| ||||||||||| |||| ||||| |||||||||||||    
T  22956693 ccaaataataaaaattgagctaccccaaacaagtttagttgccaaaaat 22956645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 23831699 - 23831747
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaat 49  Q
    |||||||||||| ||||||||||| |||| ||||| |||||||||||||    
T  23831699 ccaaataataaaaattgagctaccccaaacaagtttagttgccaaaaat 23831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8560150 - 8560095
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 56  Q
    |||||||||||| ||||||||||| ||||||||||  |||||| ||||||| ||||    
T  8560150 ccaaataataaatattgagctaccccaaataagtttggttgccgaaaattaacata 8560095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 6599 - 6773
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 172  Q
    |||||||| |||||||||||| |||||||||  ||||| |||  || ||||||||||||| | |||| |||||||||| || |||||||||||   ||||    
T  6599 ttactacaagattgatagatttatttgtatttatttgatactctcgatctcaataacaac-actagagaaacttttttcaacaataaaaatta---agac 6694  T
Q  173 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaa 251  Q
    |||||||||| ||| ||||||| |  ||||  ||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  6695 aatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacattattaa 6773  T

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Target: scaffold0110 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 7072 - 6960
Alignment:
Q  83 tgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattag-aaaacttttttaaaaataaaaattatcaagacaatagtcat 181  Q
    ||||||||||||| |||| ||||||||||| |||| | ||||| ||||||| |||  | |||||||| | || |||||||||||||||||||||||||||    
T  7072 tgattgatagatttatttatattggtttgatactttcagtctcgataacaattatagggaaaactttgtcaacaataaaaattatcaagacaatagtcat 6973  T
Q  182 aaacatattaaat 194  Q
    ||||| |||||||    
T  6972 aaacagattaaat 6960  T

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Target: scaffold0110; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7154 - 7104
Alignment:
Q  1 ccaaataataaacattgagctacctcaaataagttcagttgccaaaaatta 51  Q
    ||||||||||||||||||| |||| |||| ||||||||||| | |||||||    
T  7154 ccaaataataaacattgagttaccccaaacaagttcagttgtcgaaaatta 7104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 715 - 812
Alignment:
Q  84 gattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcat 181  Q
    |||||||||||| |||||||||||||||| | ||| ||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||||||||||    
T  715 gattgatagatttatttgtattggtttgatatttc-ggtctaaataacaacaatagagaaacctttttcaacaataaaaattatcaagacaatagtcat 812  T

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Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 428449 - 428333
Alignment:
Q  157 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 256  Q
    |||||||||| ||||||||||| ||||||| ||||||| |  |||  ||||||| || |||| ||||||| |||||||| |||| |||||||||||||||    
T  428449 taaaaattattaagacaatagtaataaacaaattaaatggacaata-gtttcttacaaataatctatttgcttacattggaaaatacattattaatctat 428351  T
Q  257 tttgtaaataatcaatta 274  Q
    || ||||| | |||||||    
T  428350 ttagtaaacagtcaatta 428333  T

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Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 428604 - 428555
Alignment:
Q  2 caaataataaacattgagctacctcaaataagttcagttgccaaaaatta 51  Q
    |||||||||||||||||||||||  |||||| |||||||| |||||||||    
T  428604 caaataataaacattgagctaccctaaataaattcagttgtcaaaaatta 428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 212060 - 212150
Alignment:
Q  206 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 299  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||| ||||||||||||||||||||||    
T  212060 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatgaataaaattgacttcttaaaaca 212150  T

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Target: scaffold1709 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 1396 - 1451
Alignment:
Q  75 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataa 130  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| |||||||||    
T  1396 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataa 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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