View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_high_5 (Length: 539)
Name: NF14285_high_5
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 386
Target Start/End: Original strand, 30361212 - 30361585
Alignment:
| Q |
5 |
attatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtataggggtatggattagcttttggaacccttgttgcttcctcttccaatt |
104 |
Q |
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| T |
30361212 |
attatgaaccaccaaaatgaacacttttgtaccacgggatagtcggtggtataggggtatgggttagcctttggaacccttgttgcttcctcttccaatt |
30361311 |
T |
|
| Q |
105 |
atttctgcaaaagttccatgtacagtttcctctctttctcagctcctctttcctgccacatgattaagaatgttggtatcagaagaactggaccgatcaa |
204 |
Q |
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| T |
30361312 |
ctttttgcaaaagttccatgtacagtttcttttctttctcagctcctctttcctgccacatgatcaagaatgttggtattagaagaactgg-ccaatcaa |
30361410 |
T |
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| Q |
205 |
tgtatagcattaacctgtcaagtttcaacgaagtagaaagnnnnnnnncctcagtgtaaagatagaatggatttggagtagtgattcttgaaattgtgtt |
304 |
Q |
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| T |
30361411 |
tgtat----------tgtcaagtttcaaccaaatggaaag-aaacgaacctcagtgtgcagatggaatggatttggagtagtggttcttggaattgtatt |
30361499 |
T |
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| Q |
305 |
acgtgtaggttcagacttcaaagaaagcagcaaaatggaaag---aaaagaagtaaatga-tttgaaatagagatgtaatcataga |
386 |
Q |
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| T |
30361500 |
acgtgcaggttcagacttcaaagaaagctgcaaaatggaaagaaaaaaagaagtaaatgattttggaatatagaagtaatcataga |
30361585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 30361634 - 30361701
Alignment:
| Q |
442 |
cttgggagctgtttgtacattttactctatacaacccaccttgtcaaataaatcagccacggcggtag |
509 |
Q |
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| T |
30361634 |
cttgggagctggttgtacattttagtctataccacccaccttgtcaaataaatcagccactgcggtag |
30361701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 19916610 - 19916701
Alignment:
| Q |
3 |
agattatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtataggggtatggattagcttttggaacccttgttgcttcc |
94 |
Q |
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| T |
19916610 |
agattatgaaccaccaaaatgaacactttagtaccacgggatagtcggtggtataggggtataggttagcttttggaacccttgttgcttcc |
19916701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 24465771 - 24465655
Alignment:
| Q |
2 |
tagattatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtataggggtatggattagcttttggaacccttgttgcttcctcttcca |
101 |
Q |
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||||||||||||||||||||| |||||||| |||||||| | |||| ||||| ||||| ||| ||||| ||||||| || || |||||||||||||| |
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| T |
24465771 |
tagattatgaaccaccaaaataaacacttttgtaccacgacatagtccgtggtgcaggggattgggttagcctttggaagccgtgctgcttcctcttcca |
24465672 |
T |
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| Q |
102 |
attatttctgcaaaagt |
118 |
Q |
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| T |
24465671 |
attctttctgcaaaagt |
24465655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 24466134 - 24466236
Alignment:
| Q |
2 |
tagattatgaaccaccaaaatgaacactttagtaccacgggacagtcggtggtataggggtatggattagcttttggaacccttgttgcttcctcttcca |
101 |
Q |
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||||||||||||||||||||| |||||||| |||||||| || ||||| |||| ||||| ||| ||||| |||||||||| || |||||||||||||| |
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| T |
24466134 |
tagattatgaaccaccaaaataaacacttttgtaccacgagatagtcgatggtgcaggggattgggttagcctttggaacccgtgctgcttcctcttcca |
24466233 |
T |
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| Q |
102 |
att |
104 |
Q |
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||| |
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| T |
24466234 |
att |
24466236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 24466269 - 24466328
Alignment:
| Q |
253 |
cctcagtgtaaagatagaatggatttggagtagtgattcttgaaattgtgttacgtgtag |
312 |
Q |
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| T |
24466269 |
cctcagtgtcaagatggaatggatttggactagtgattcttggagttgagttgcgtgtag |
24466328 |
T |
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