View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_1 (Length: 830)
Name: NF14285_low_1
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 19 - 830
Target Start/End: Complemental strand, 19912275 - 19911464
Alignment:
| Q |
19 |
cgaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaacatattattgtaataacaccatcttttcgatt |
118 |
Q |
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| T |
19912275 |
cgaagagtcgaacgcttgtagacaccatcaaagaagacgagatcaacaaaaaagaccgcaggtaacaacatattattgtaataacaccatcttttcgatt |
19912176 |
T |
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| Q |
119 |
acattgttttgtttttaatgaaaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcct |
218 |
Q |
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| T |
19912175 |
acattgttttgtttttaatgaaaaattatgttagtatagattggtctatgagaaatcaaaatgctagtgtttagatgagatgacatatgtgtattgtcct |
19912076 |
T |
|
| Q |
219 |
cttacattgtcgaggaaagactatggttctcaaatagttagctcacagtttcattttcactgatttggaagatcttggaaagcattcaaggacaagattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19912075 |
cttacattgtcgaggaaagactatggttctcaaatagttagctcacagtttcattttcactgatttggaagatcttggaaagcattcaaggacaagattc |
19911976 |
T |
|
| Q |
319 |
gactcaaacgcactggctctacttggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcgg |
418 |
Q |
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| T |
19911975 |
gactcaaacgcactggctctgcttggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcgg |
19911876 |
T |
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| Q |
419 |
tcgtcgcaactcagtccgaatccaaactcaccacgatgactcagacatgtcaaccacccaatccatgactcaccaaggggacgaccttgacccatcggag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
19911875 |
tcgtcgcaactcagtccgaatccaaactcaccacgatgactcagacatgtcaaccacccaatccatgactcaccaaggggacgaccctgactcatcggag |
19911776 |
T |
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| Q |
519 |
gagtccaatcctccggccactagaccacagttcactcgccgcatctccacacgtctctcggtcgaatcaccagaaaactcctctggcggaggaaatctcc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911775 |
gagtccaatcctccggccactagaccacagttcactcgccgcatctccacacgtctctcggtcgaatcaccagaaaactcctctggcggaggaaatctcc |
19911676 |
T |
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| Q |
619 |
ggccgcaactctcacgaagaaattccaccaatgtgtcatcagagccgtttcaccgaggacgtgtagtgacttttagagacaacttcgatgaggattatcc |
718 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19911675 |
ggtcgcaactctcacgaagaaattccaccaatgtgtcatcagagccgtttcaccgaggacgtgtagtgacttttagagacaacttcgatgaggatgatcc |
19911576 |
T |
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| Q |
719 |
cgacgatgatgacaacaagaaaccagcgacagtgagggcactttcagcaagggaggcagtggcagcgcaggaagcggcagaagccgctgcagcaacagag |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19911575 |
cgacgatgatgacaacaagaaaccagcgacagtgagggcactttcagcaagggaggcagtggcagcgcaggaagcggcagaagctgctgcagcaacagag |
19911476 |
T |
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| Q |
819 |
gtggagacttca |
830 |
Q |
| |
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|||||||||||| |
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| T |
19911475 |
gtggagacttca |
19911464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 268 - 472
Target Start/End: Original strand, 29404786 - 29404987
Alignment:
| Q |
268 |
ttcattttcactgatttggaagatcttggaaagcattcaaggacaagattcgactcaaacgcactggctctacttggacatcaacgattcatattccaac |
367 |
Q |
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|||||||||| |||| |||||||||||||||||| || || |||||| |||| || || || |||||||| ||||||||||| | |||| |||||||| |
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| T |
29404786 |
ttcattttcattgatatggaagatcttggaaagcctttaaagacaagcttcggctaaagcgtgctggctctgcttggacatcatcaattcccattccaac |
29404885 |
T |
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| Q |
368 |
ttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaatccaaactcaccacgatgactcagacatg |
467 |
Q |
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|| || || |||||||||||||| || || ||||| ||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||||| |
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| T |
29404886 |
atccgacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaactcagttcgagtccaaactcattac---gactcagacatg |
29404982 |
T |
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| Q |
468 |
tcaac |
472 |
Q |
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||||| |
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| T |
29404983 |
tcaac |
29404987 |
T |
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