View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_11 (Length: 454)
Name: NF14285_low_11
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41546332 - 41546532
Alignment:
| Q |
1 |
ctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggcaa |
100 |
Q |
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| T |
41546332 |
ctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggcaa |
41546431 |
T |
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| Q |
101 |
ttcggtaattttttagaccttcatgaaactcttaattat---taattgagattaatgttttatgcattggctgtgtaacatttttacacataaactcaat |
197 |
Q |
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| T |
41546432 |
ttcggtaattttttagaccttcatgaaactcctaattattagtaattgagattaat-tgttatgcattgactgtgtaacatttttacacataaactcaat |
41546530 |
T |
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| Q |
198 |
ca |
199 |
Q |
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|| |
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| T |
41546531 |
ca |
41546532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 238 - 444
Target Start/End: Original strand, 41546615 - 41546828
Alignment:
| Q |
238 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataacacatgc |
337 |
Q |
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| T |
41546615 |
ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataactcatgc |
41546714 |
T |
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| Q |
338 |
tttctttggtttcaatggtaaatatcattaaattccctattacagctttgaatatctagta---aattgtattag----aacaatcagccatgtgatatt |
430 |
Q |
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| T |
41546715 |
tttctttggtttcaatggtaaatatcattaaattcccttatacagcttggaataactactaattaactgtattagaattaacaatcagccatgtgatatt |
41546814 |
T |
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| Q |
431 |
agatgatgatgatg |
444 |
Q |
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| T |
41546815 |
agatgatgatgatg |
41546828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 26831746 - 26831705
Alignment:
| Q |
246 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
287 |
Q |
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| T |
26831746 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
26831705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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