View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_13 (Length: 444)
Name: NF14285_low_13
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 8829193 - 8829606
Alignment:
| Q |
19 |
tttactgcatggaatggacaattcaaatcactctgacttaatcagtgagattgaggaaggaagttcctcaggaataaaagatatttgtcattctaacttt |
118 |
Q |
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| T |
8829193 |
tttactgcatggaatggacaattcaaatcactctgacttaatcagtgagattgaggaaggaagttcctcaggaataaaagatatttgtcattctaacttt |
8829292 |
T |
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| Q |
119 |
gatgatgtgtcaatgattcaaagcaatgcaaaaattccaagttatgatgaagattaccatgaccattatcatgatgtaaaacatgatttgcctccccctc |
218 |
Q |
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| T |
8829293 |
gatgatgtgtcaatgattcaaagcaatgcaaaaattccaagttatgatgaagattaccatgaccattatcatgatgtaaaacatgatttgcctccccctc |
8829392 |
T |
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| Q |
219 |
cactgtcttgagaaagtgttgcttgtattgtgaacaacatgatgaattgaattggaaaacttattatgacttcctctcatactatttatagtttatatta |
318 |
Q |
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| T |
8829393 |
cactgtcttgagaaagtgttgcttgtattgtgaacaacatgatgaattgaattggaaaac------tgacttcctctcatactatttatagtttatatta |
8829486 |
T |
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| Q |
319 |
aactaattgctgcatggttaaaagactccacagatgccattatgttgataccagactctcatggtaaacatgtagatccaagttccaactcaagtttgcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8829487 |
aactaattgctgcatggttaaaagactccacagatgccattatgttgataccagactctcatggtaaacatgtagatccaagttccaactcaagtttgcc |
8829586 |
T |
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| Q |
419 |
taaaatcctagaataatcta |
438 |
Q |
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| T |
8829587 |
taaaatcctaggataatcta |
8829606 |
T |
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