View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_16 (Length: 405)
Name: NF14285_low_16
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 33170354 - 33169995
Alignment:
| Q |
30 |
atactatgtattgagttgtgatttgatgctgtttagtttagagtatgcttgtacatactatatattgaattaaaaggagttcatcttcgttttagcatct |
129 |
Q |
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| T |
33170354 |
atactatgtattgagttgtgatttgatgctgtttagtttagagtatgcttgtacatactatatattgaattaaaaggagttcatcttcgttttagcatct |
33170255 |
T |
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| Q |
130 |
tttgaattgaaaggagtagcaatttaagtgtatttcaaaagttatattctgaatgaagagggacataaatcatttcaattcaaatggggcactagggctt |
229 |
Q |
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| T |
33170254 |
tttgaattgaaaggagtagcaatttaagtgtatttcaaaagttatattctgaatgaagagggacataaatcatttcaattcaaatggggcactaggactt |
33170155 |
T |
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| Q |
230 |
gtagacaggatcagaagatgttatacaaattattggttgatttcatgattatatcttacgcaaaactatataaattggaaaatgcaacactagaaacttc |
329 |
Q |
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| T |
33170154 |
gtagacaggatcagaagatgttatacaaattattggttgatttcatgattatatcttacgcaaaactatataaattggaaaatgcaacactagaaacttc |
33170055 |
T |
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| Q |
330 |
aagnnnnnnnnnttacttcaatggtgtattggtcacaaataaccgattctcactgtcacg |
389 |
Q |
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| T |
33170054 |
aaggaaaaaaaaatacttcaatggtgtattggtcacaaataaccgattctcgctatcacg |
33169995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 33170390 - 33170341
Alignment:
| Q |
48 |
tgatttgatgctgtttagtttagagtatgcttgtacatactatatattga |
97 |
Q |
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| T |
33170390 |
tgatttgatgctattaagtttagagtatgcttgtacatactatgtattga |
33170341 |
T |
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