View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_17 (Length: 387)
Name: NF14285_low_17
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 34834586 - 34834954
Alignment:
| Q |
1 |
gtaagagtggagatggggcaacctgattcttcttggttggacgtttcacctctttagagcatatgtgtcttgtgtgttgaaagttcagctgcagtgtcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34834586 |
gtaagagtggagatggggcaacctgattcttcttggttggacgtttcacctctttagagtatatgtgtcttgtgtgttgaaagttcagctgcagtgtcaa |
34834685 |
T |
|
| Q |
101 |
atttgagtgttcttaaagctatgtaaaatttcagacacgtacatacaaaccgacacagaatgtaacagatttcacacgggaaaaatacgtctatgatcac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834686 |
atttgagtgttcttaaagctatttaaaatttcagacacgtacatacaaaccgacacagaatgtaacagatttcacacgggaaaaatacgtctatgatcac |
34834785 |
T |
|
| Q |
201 |
agaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactattcctnnnnnnnnnntaatcaaagaattaataatttctcaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |
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| T |
34834786 |
agaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactattcctaaaaaaaaaaaaatcaaagaattaataatttttcagt |
34834885 |
T |
|
| Q |
301 |
ttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctctttt |
369 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34834886 |
ttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctctttt |
34834954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 28963274 - 28963647
Alignment:
| Q |
1 |
gtaagagtggagatggggcaacctgattcttcttggttggacgtttcacctctttagagcatatgtgtcttgtgtgttgaaagttcagctgcagtgtcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28963274 |
gtaagagtggagatggggcaacctgattcttcttggttggacgtttcacctctttagagtatatgtgtcttgtgtgttgaaagttcagctgcagtgtcaa |
28963373 |
T |
|
| Q |
101 |
atttgagtgttcttaaagctatgtaaaatttcagacacgtacatacaaaccgacacagaatgtaacagatttcacacgggaaaaatacgtctatgatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28963374 |
atttgagtgttcttaaagctatgtaaaatttcagacacgtacatacaaaccgacacagaatgtaacagatttcacacgggaaaaatacgtctatgatcac |
28963473 |
T |
|
| Q |
201 |
agaaatgtatacatctatctatatatgtatgcaccaaccaataatta---tactactactattcct--nnnnnnnnnntaatcaaagaattaataatttc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
28963474 |
agaaatgtatacatctatctatatatgtatgcaccaaccaataattatactactactactattcctaaaaaaaaataaaaatcaaagaattaataatttc |
28963573 |
T |
|
| Q |
296 |
tcaatttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctctttt |
369 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28963574 |
tcagtttcttttttgaagaaaaataatttctcagttattcgtcgtgtttatttaacacaatttacacctctttt |
28963647 |
T |
|
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