View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_20 (Length: 314)
Name: NF14285_low_20
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 15682114 - 15681973
Alignment:
| Q |
173 |
gtaattgttttggtgctgaccttattagatattgatgatggctttggtgcggttggtgggaggtaagagatgcgctggtgatgatgaaagtgtgagaata |
272 |
Q |
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| T |
15682114 |
gtaattgttttggtgctgaccttattagatattgatgatggctttggtgcggttggtgggaggtaagagatgcggtggtgatgatgaaagtgtgagaata |
15682015 |
T |
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| Q |
273 |
ataataatgaagggaggaagagagaagaagacatgatgatta |
314 |
Q |
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| T |
15682014 |
ataataatgaagggaggaagagagaagaggacatgatgatta |
15681973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 15592779 - 15592888
Alignment:
| Q |
173 |
gtaattgttttggtgctgaccttattagatattgatgatggctttggtgcggttggtgggaggtaagagatgcgctggtgatgatgaaagtgtgagaata |
272 |
Q |
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| T |
15592779 |
gtaattgttttggtattgaccttattagagatggatgatggctttggtgcggttggtgggaggtagaagatgccgtagtgatgatgacagtgagagaata |
15592878 |
T |
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| Q |
273 |
ataataatga |
282 |
Q |
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| T |
15592879 |
ataataatga |
15592888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 15682276 - 15682182
Alignment:
| Q |
20 |
gaaagtagcatgatgataagcatggaataaagaagaagaaga-------tatcacacacccttgaaatcaaaagagtaaaccttggtagctaggg |
107 |
Q |
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| T |
15682276 |
gaaagtagcatgatgataagcatggaataaagaagaagaagaagaagaatatcacacacccttgagatcaaaagagtaaaccttggtagctaggg |
15682182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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