View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_21 (Length: 306)
Name: NF14285_low_21
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 9393685 - 9393410
Alignment:
| Q |
13 |
gtgagatgaatgtgtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagatt |
112 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9393685 |
gtgatatgaatgcgtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagagaattttcaaatctgatgtaaaagatgaaaatcctttagatt |
9393586 |
T |
|
| Q |
113 |
gtttagttaggaaaataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9393585 |
gtttagttaggaaaataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgt |
9393486 |
T |
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| Q |
213 |
tcagttttgaaatatgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
288 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9393485 |
tcagttttgaaatacgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
9393410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 31943311 - 31943040
Alignment:
| Q |
19 |
tgaatgtgtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttag |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31943311 |
tgaatgtgtgtgcaggtgattaaggaccatggtaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttag |
31943212 |
T |
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| Q |
119 |
ttaggaaaataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttc--ag |
216 |
Q |
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| T |
31943211 |
ttaggaaagtaaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttctaattttgcattataatgttcagag |
31943112 |
T |
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| Q |
217 |
ttttgaaatatgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31943111 |
ttttgaaatatgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
31943040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 1341499 - 1341240
Alignment:
| Q |
19 |
tgaatgtgtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1341499 |
tgaatgtgtgtgcaggtgattaaggaccatgggaatctggttgacaaaaagaggattttcatatctgatgtaaaagatgaaaatcctttagattgtttag |
1341400 |
T |
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| Q |
119 |
ttaggaaaataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgttc--ag |
216 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| || |
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| T |
1341399 |
ttaggaaagttaacattgtacaaatttctcctgatgtaagtgcttcatgtag---ttcttttgttgtataa---------ttgcattataatgttcagag |
1341312 |
T |
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| Q |
217 |
ttttgaaatatgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
288 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1341311 |
ttttgaaatatgttgattttatacactacaggctgcaaaaaagaagaaaattcctccttgtgaattctattt |
1341240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 46630597 - 46630336
Alignment:
| Q |
26 |
gtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaggaa |
125 |
Q |
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||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46630597 |
gtgtgcaggtgatcaaggaccacgggaatctgtttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttagttaagaa |
46630498 |
T |
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| Q |
126 |
aataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattataatgtt--cagttttgaa |
223 |
Q |
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| || ||||||| ||||||||||||| ||||||||||||||| ||| ||||||| || |||| || ||||||||||||||||| ||||||||| |
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| T |
46630497 |
agtaggaattgtacggatttctcctgatgcaagtgctttgtgtag---ttcctttgttgcatgacttatacttttgcattataatgtttggagttttgaa |
46630401 |
T |
|
| Q |
224 |
atatgttgattttgtttactacaggctgcaaaaaagaagaaaattcctccttgtgacttctattt |
288 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| || ||||| |
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| T |
46630400 |
atatgttgattttgtatactaaaggctgcaaaaaagaagaaaattcctcctagtgaattttattt |
46630336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 5643573 - 5643391
Alignment:
| Q |
19 |
tgaatgtgtgtgcaggtgattaaggaccatgggaatctagttgacaaaaagaggattttcaaatctgatgtaaaagatgaaaatcctttagattgtttag |
118 |
Q |
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||||||||||||||||| || ||| |||||||| |||| |||| |||| |||||||||||||||||||| ||||||||||| ||| | |||||||||| |
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| T |
5643573 |
tgaatgtgtgtgcaggttatcaagaaccatggggatctcattgatgaaaaaaggattttcaaatctgatgtgaaagatgaaaaccctcttgattgtttag |
5643474 |
T |
|
| Q |
119 |
ttaggaaaataaacattgtacaaatttctcctgatgtaagtgctttgtgtagttcttcttttgttgtataacttgtaattttgcattat |
207 |
Q |
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||| |||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||| |
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| T |
5643473 |
ttaagaaagttaacattgtacaaatttctcctgatgtaagtgctttgtg------ttcttttgttgtgtaatttataattttgcattat |
5643391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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