View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14285_low_3 (Length: 641)
Name: NF14285_low_3
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14285_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 35786545 - 35786868
Alignment:
| Q |
18 |
gttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaggtaattgatttaacagaatcacc |
117 |
Q |
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| T |
35786545 |
gttgttgattcaaaacattttgtgcatgttgttcttgatcatgatgatgactactatgaatattctgaccgtacgaagtaattgatttaacagaatcacc |
35786644 |
T |
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| Q |
118 |
acttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatggtgttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaa |
217 |
Q |
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| T |
35786645 |
acttgcatgttcaaaatcttgatttagttgttgatgatgatattgttgatgctgttgcacttgcacttgcaccatttcttgatgagggttatgatgaaaa |
35786744 |
T |
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| Q |
218 |
tgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaac |
317 |
Q |
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| T |
35786745 |
tgaactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaac |
35786844 |
T |
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| Q |
318 |
cagaaggacgaggaagtaaaggac |
341 |
Q |
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| T |
35786845 |
cagaaggacgaggaagtaaaggac |
35786868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 431 - 632
Target Start/End: Original strand, 35786958 - 35787159
Alignment:
| Q |
431 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
530 |
Q |
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| T |
35786958 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
35787057 |
T |
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| Q |
531 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35787058 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
35787157 |
T |
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| Q |
631 |
gc |
632 |
Q |
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|| |
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| T |
35787158 |
gc |
35787159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 571
Target Start/End: Original strand, 25896641 - 25896674
Alignment:
| Q |
538 |
tggttcacgaatttcagcaacccatttaccccaa |
571 |
Q |
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| T |
25896641 |
tggttcacgaatctcagcaacccatttaccccaa |
25896674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 571
Target Start/End: Complemental strand, 52690586 - 52690554
Alignment:
| Q |
539 |
ggttcacgaatttcagcaacccatttaccccaa |
571 |
Q |
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| T |
52690586 |
ggttcacggatttcagcaacccatttaccccaa |
52690554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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