View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14285_low_31 (Length: 249)

Name: NF14285_low_31
Description: NF14285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14285_low_31
NF14285_low_31
[»] scaffold0055 (20 HSPs)
scaffold0055 (119-235)||(13439-13555)
scaffold0055 (119-235)||(52921-53035)
scaffold0055 (119-235)||(54814-54928)
scaffold0055 (119-235)||(68457-68571)
scaffold0055 (119-235)||(13093-13207)
scaffold0055 (119-235)||(33747-33863)
scaffold0055 (119-235)||(13184-13300)
scaffold0055 (180-235)||(13407-13462)
scaffold0055 (180-234)||(54653-54707)
scaffold0055 (180-234)||(68296-68350)
scaffold0055 (180-234)||(71216-71270)
scaffold0055 (180-234)||(13631-13685)
scaffold0055 (180-234)||(52760-52814)
scaffold0055 (119-174)||(52889-52944)
scaffold0055 (119-174)||(68425-68480)
scaffold0055 (119-174)||(71346-71401)
scaffold0055 (182-234)||(33586-33638)
scaffold0055 (119-174)||(54782-54837)
scaffold0055 (119-174)||(13532-13587)
scaffold0055 (119-174)||(33715-33770)
[»] scaffold0052 (21 HSPs)
scaffold0052 (119-235)||(70980-71096)
scaffold0052 (119-235)||(19949-20063)
scaffold0052 (119-235)||(29221-29335)
scaffold0052 (119-235)||(52420-52534)
scaffold0052 (119-235)||(49829-49943)
scaffold0052 (119-235)||(62201-62317)
scaffold0052 (119-235)||(71328-71442)
scaffold0052 (119-235)||(71235-71351)
scaffold0052 (180-235)||(71073-71128)
scaffold0052 (180-234)||(29060-29114)
scaffold0052 (180-234)||(49668-49722)
scaffold0052 (180-234)||(19788-19842)
scaffold0052 (180-226)||(52267-52313)
scaffold0052 (180-234)||(70850-70904)
scaffold0052 (119-174)||(29189-29244)
scaffold0052 (182-234)||(62426-62478)
scaffold0052 (119-174)||(19917-19972)
scaffold0052 (119-174)||(49797-49852)
scaffold0052 (119-174)||(52388-52443)
scaffold0052 (119-174)||(62294-62349)
scaffold0052 (119-174)||(70948-71003)
[»] scaffold0021 (8 HSPs)
scaffold0021 (119-235)||(48091-48205)
scaffold0021 (127-235)||(33846-33954)
scaffold0021 (121-235)||(33939-34051)
scaffold0021 (119-235)||(94690-94804)
scaffold0021 (180-234)||(33684-33738)
scaffold0021 (180-234)||(47930-47984)
scaffold0021 (119-174)||(48059-48114)
scaffold0021 (127-168)||(94664-94705)
[»] chr6 (5 HSPs)
chr6 (117-235)||(9476368-9476486)
chr6 (131-213)||(9485790-9485872)
chr6 (129-234)||(9476116-9476221)
chr6 (130-231)||(9485536-9485637)
chr6 (119-173)||(9476337-9476391)
[»] chr3 (1 HSPs)
chr3 (119-173)||(19657198-19657252)


Alignment Details
Target: scaffold0055 (Bit Score: 97; Significance: 9e-48; HSPs: 20)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 13439 - 13555
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||    
T  13439 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttacaggcagtgcaggtcaataaacatagccgtgttggtccctta 13538  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  13539 tcggaaaaaattgtgcc 13555  T

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Target: scaffold0055; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 53035 - 52921
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  53035 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 52938  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  52937 tcggaaaaaattgtgcc 52921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 54928 - 54814
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  54928 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 54831  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  54830 tcggaaaaaattgtgcc 54814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 68571 - 68457
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  68571 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 68474  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  68473 tcggaaaaaattgtgcc 68457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 13093 - 13207
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  | |||||||||||||||||||||||||||||||||||      
T  13093 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gtagtgcaggtcaataaacatagccgtgttggtccctcc 13190  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||||||||| |||||||    
T  13191 tcggaaaaacttgtgcc 13207  T

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Target: scaffold0055; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 33863 - 33747
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |  || ||||||||||||||||||||||||| ||||||||||||      
T  33863 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcattttcttaccagcagtgcaggtcaataaacatagctgtgttggtccctcc 33764  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||| ||| |||||||||    
T  33763 tcgcaaataattgtgcc 33747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 13184 - 13300
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||  |||  |||||| |||||||||||||||||||||||||||||      
T  13184 tccctcctcggaaaaacttgtgcccttgtaacgctgcggggcgacgagcatttgcttacttacagtgctggtcaataaacatagccgtgttggtccctcc 13283  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||||||| ||| |||||    
T  13284 tcggaaataatcgtgcc 13300  T

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Target: scaffold0055; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 13407 - 13462
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgcc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  13407 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgcc 13462  T

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Target: scaffold0055; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 54707 - 54653
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  54707 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 54653  T

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Target: scaffold0055; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 68350 - 68296
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  68350 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 68296  T

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Target: scaffold0055; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 71270 - 71216
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  71270 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 71216  T

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Target: scaffold0055; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 13631 - 13685
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  13631 gcagtgctggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 13685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 52814 - 52760
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  52814 gcagtgcaggtcaataaacatagccgtgttggtcccttctcgggaaaacttgtgc 52760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 52944 - 52889
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  52944 tccctcctcggaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 52889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 68480 - 68425
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  68480 tccctcctcggaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 68425  T

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Target: scaffold0055; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 71401 - 71346
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  71401 tccctcctcggaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 71346  T

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Target: scaffold0055; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 33638 - 33586
Alignment:
Q  182 agtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  33638 agtgtaggtcaataaacatagccgtgttggtcccttctcggaaacacttgtgc 33586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 54837 - 54782
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  54837 tccctcctcggaaaaaattgtgcccttgtaacggtgcggggcgactagcacttgca 54782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 13532 - 13587
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    |||||| ||||||||| |||||||||||||||  ||| ||||||| ||||||||||    
T  13532 tcccttatcggaaaaaattgtgcccttgtaacgatgcagggcgaccagcatttgca 13587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 33770 - 33715
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||| ||| | ||||||||||||||| ||||||||||||||||| |||||    
T  33770 tccctcctcgcaaataattgtgcccttgtaacgctgcggggcgactagcacttgca 33715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 97; Significance: 9e-48; HSPs: 21)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 71096 - 70980
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||    
T  71096 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttacaggcagtgcaggtcaataaacatagccgtgttggtccctta 70997  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  70996 tcggaaaaaattgtgcc 70980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 20063 - 19949
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  20063 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 19966  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  19965 tcggaaaaaattgtgcc 19949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 29335 - 29221
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  29335 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 29238  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  29237 tcggaaaaaattgtgcc 29221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 52534 - 52420
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  52534 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 52437  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  52436 tcggaaaaaattgtgcc 52420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 49943 - 49829
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  49943 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 49846  T
Q  219 tcggaaaaaattgtgcc 235  Q
    || ||||||||||||||    
T  49845 tcagaaaaaattgtgcc 49829  T

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Target: scaffold0052; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 62201 - 62317
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |  || ||||||||||||||||||||||||| ||||||||||||      
T  62201 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcattttcttaccagcagtgcaggtcaataaacatagctgtgttggtccctcc 62300  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||||||| |||||||||    
T  62301 tcggaaataattgtgcc 62317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 71442 - 71328
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  | |||||||||||||||||||||||||||||||||||      
T  71442 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gtagtgcaggtcaataaacatagccgtgttggtccctcc 71345  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||||||||| |||||||    
T  71344 tcggaaaaacttgtgcc 71328  T

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Target: scaffold0052; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 71351 - 71235
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||  |||  |||||| |||||||||||||||||||||||||||||      
T  71351 tccctcctcggaaaaacttgtgcccttgtaacgctgcggggcgacgagcatttgcttacttacagtgctggtcaataaacatagccgtgttggtccctcc 71252  T
Q  219 tcggaaaaaattgtgcc 235  Q
    ||||||| ||| |||||    
T  71251 tcggaaataatcgtgcc 71235  T

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Target: scaffold0052; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 71128 - 71073
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgcc 235  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  71128 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgcc 71073  T

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Target: scaffold0052; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 29114 - 29060
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29114 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 29060  T

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Target: scaffold0052; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 49722 - 49668
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  49722 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 49668  T

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Target: scaffold0052; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 19842 - 19788
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||    
T  19842 gcagtgcaggtcaataaacatagccgtgttggtcccttctcgggaaaacttgtgc 19788  T

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Target: scaffold0052; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 52313 - 52267
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaa 226  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  52313 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaa 52267  T

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Target: scaffold0052; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 70904 - 70850
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  70904 gcagtgctggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 70850  T

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Target: scaffold0052; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 29244 - 29189
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  29244 tccctcctcggaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 29189  T

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Target: scaffold0052; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 62426 - 62478
Alignment:
Q  182 agtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  62426 agtgtaggtcaataaacatagccgtgttggtcccttctcggaaacacttgtgc 62478  T

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Target: scaffold0052; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 19972 - 19917
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  19972 tccctcctcggaaaaaattgtgcccttgtaacggtgcggggcgactagcacttgca 19917  T

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Target: scaffold0052; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 49852 - 49797
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| ||| |||||| ||||||||||||||| ||||||||||||||||| |||||    
T  49852 tccctcctcagaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 49797  T

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Target: scaffold0052; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 52443 - 52388
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| |||||||||||||||  |||||||||||||||| |||||    
T  52443 tccctcctcggaaaaaattgtgcccttgtaacggtgcggggcgactagcacttgca 52388  T

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Target: scaffold0052; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 62294 - 62349
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||| | ||||||||||||||| ||||||||||||||||| |||||    
T  62294 tccctcctcggaaataattgtgcccttgtaacgctgcggggcgactagcacttgca 62349  T

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Target: scaffold0052; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 71003 - 70948
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    |||||| ||||||||| |||||||||||||||  ||| ||||||| ||||||||||    
T  71003 tcccttatcggaaaaaattgtgcccttgtaacgatgcagggcgaccagcatttgca 70948  T

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Target: scaffold0021 (Bit Score: 86; Significance: 3e-41; HSPs: 8)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 48205 - 48091
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||      
T  48205 tcccttctcggaaaaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctcc 48108  T
Q  219 tcggaaaaaattgtgcc 235  Q
    |||||||||||||||||    
T  48107 tcggaaaaaattgtgcc 48091  T

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Target: scaffold0021; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 33954 - 33846
Alignment:
Q  127 cggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaa 226  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||  | | ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  33954 cggaaaaacttgtgcccttgtaacgctgcagggcgactagcatttgcttatttgcagtgctggttaataaacatagccgtgttggtcccttatcggaaaa 33855  T
Q  227 aattgtgcc 235  Q
    |||||||||    
T  33854 aattgtgcc 33846  T

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Target: scaffold0021; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 34051 - 33939
Alignment:
Q  121 ccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtcccttatc 220  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||   |    
T  34051 ccttctcggataaacttgtgcccttgtaacgctgcggggcgactagcatttgcttac--gcagtgcaggtcaataaacatagccgtgttggtccctccac 33954  T
Q  221 ggaaaaaattgtgcc 235  Q
    ||||||| |||||||    
T  33953 ggaaaaacttgtgcc 33939  T

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Target: scaffold0021; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 235
Target Start/End: Complemental strand, 94804 - 94690
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccctta 218  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||||||||  ||  | |||||||||||||||||||||||||||||||||||      
T  94804 tcccttctcgaaaaaacttgtgcccttgtaacgctccggggcgactagcatttgcttac--gtagtgcaggtcaataaacatagccgtgttggtccctcc 94707  T
Q  219 tcggaaaaaattgtgcc 235  Q
     |||||||| |||||||    
T  94706 acggaaaaacttgtgcc 94690  T

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Target: scaffold0021; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 33738 - 33684
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  33738 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 33684  T

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Target: scaffold0021; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 47984 - 47930
Alignment:
Q  180 gcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaattgtgc 234  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  47984 gcagtgcaggtcaataaacatagccgtgttggtcccttctcggaaaaacttgtgc 47930  T

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Target: scaffold0021; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 48114 - 48059
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgca 174  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  48114 tccctcctcggaaaaaattgtgcccttgtaacgctgcggggcgactagcacttgca 48059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 94705 - 94664
Alignment:
Q  127 cggaaaaacttgtgcccttgtaacactgcggggcgactagca 168  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  94705 cggaaaaacttgtgcccttgtaacgctgcggggcgactagca 94664  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 9476486 - 9476368
Alignment:
Q  117 gttcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtccct 216  Q
    ||||||| |||||||| |||||||||||||||||| || |||| |||||||||||||  ||| |||||||||| |||||||||||||| | |||||||||    
T  9476486 gttccctactcggaaacacttgtgcccttgtaacattgaggggagactagcatttgcttacttgcagtgcaggacaataaacatagccattttggtccct 9476387  T
Q  217 tatcggaaaaaattgtgcc 235  Q
    ||||||||||| |||||||    
T  9476386 tatcggaaaaacttgtgcc 9476368  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 9485790 - 9485872
Alignment:
Q  131 aaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtc 213  Q
    |||| |||||||||||||||||||| |||| |||||||||| |  ||| ||||||||||||||||||||||||||||||||||    
T  9485790 aaaaattgtgcccttgtaacactgcagggctactagcattttcttacttgcagtgcaggtcaataaacatagccgtgttggtc 9485872  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 9476221 - 9476116
Alignment:
Q  129 gaaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaa 228  Q
    |||||||||||||||||||||| ||||||||||| || |||||||  ||| |||||| || ||||||||||||| ||||||||| | || ||| |||||     
T  9476221 gaaaaacttgtgcccttgtaacgctgcggggcgagtaacatttgcttacttgcagtgtagatcaataaacatagtcgtgttggttcattctcgaaaaaac 9476122  T
Q  229 ttgtgc 234  Q
    ||||||    
T  9476121 ttgtgc 9476116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 9485536 - 9485637
Alignment:
Q  130 aaaaacttgtgcccttgtaacactgcggggcgactagcatttgcaaactagcagtgcaggtcaataaacatagccgtgttggtcccttatcggaaaaaat 229  Q
    ||||||||||||||||||||    |||||||||||||||||| |  | | |  |||||  ||||||||||||||||||||||||||||||||||||||||    
T  9485536 aaaaacttgtgcccttgtaatgtagcggggcgactagcattttcttatttgttgtgcaactcaataaacatagccgtgttggtcccttatcggaaaaaat 9485635  T
Q  230 tg 231  Q
    ||    
T  9485636 tg 9485637  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 9476391 - 9476337
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgc 173  Q
    |||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||    
T  9476391 tcccttatcggaaaaacttgtgcccttgtaacgctgcggagtgactaacatttgc 9476337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 19657198 - 19657252
Alignment:
Q  119 tcccttctcggaaaaacttgtgcccttgtaacactgcggggcgactagcatttgc 173  Q
    ||||||||| |||||||||||||||||||||   || ||||||||| ||||||||    
T  19657198 tcccttctcagaaaaacttgtgcccttgtaatgatgtggggcgacttgcatttgc 19657252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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